RE', MATTEO
RE', MATTEO
Dipartimento di Informatica Giovanni Degli Antoni
A fast ranking algorithm for predicting gene functions in biomolecular networks
2012 M. Re, M. Mesiti, G. Valentini
A Graphical Tool for the Exploration and Visual Analysis of Biomolecular Networks
2020 C.T. Ba, E. Casiraghi, M. Frasca, J. Gliozzo, G. Grossi, M. Mesiti, M. Notaro, P. Perlasca, A. Petrini, M. Re', G. Valentini
A Hierarchical Ensemble Method for DAG-Structured Taxonomies
2015 P.N. Robinson, M. Frasca, S. Köhler, M. Notaro, M. Re, G. Valentini
A high performance grid-web service framework for the identification of 'conserved sequence tags'
2007 P. D’Onorio De Meo, D. Carrabino, N. Sanna, T. Castrignano, G. Grillo, F. Licciulli, S. Liuni, M. Re, F. Mignone, G. Pesole
A neural network algorithm for semi-supervised node label learning from unbalanced data
2013 M. Frasca, A. Bertoni, M. Re, G. Valentini
A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22
2006 Matteo Rè, Flavio Mignone, Michele Iacono, Giorgio Grillo, Sabino Liuni, Graziano Pesole
A novel ensemble approach for the subcellular localization of proteins
2011 A. Rozza, G. Lombardi, M. Re, E. Casiraghi, G. Valentini, P. Campadelli
A novel ensemble technique for protein subcellular location prediction
2011 A. Rozza, G. Lombardi, M. Rè, E. Casiraghi, G. Valentini, P. Campadelli
A stability-based algorithm to validate hierarchical clusters of genes
2009 R. Avogadri, M. Brioschi, F. Ferrazzi, M. Re, A. Beghini, G. Valentini
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics
2009 M. Rè, G. Pesole, D.S. Horner
An automated pipeline for multi-species protein function prediction from the UniProt Knowledgebase
2014 M. Re, M. Mesiti, G. Valentini
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
2016 Y. Jiang, T.R. Oron, W.T. Clark, A.R. Bankapur, D. D’Andrea, R. Lepore, C.S. Funk, I. Kahanda, K.M. Verspoor, A. Ben-Hur, D.C.E. Koo, D. Penfold-Brown, D. Shasha, N. Youngs, R. Bonneau, A. Lin, S.M..E. Sahraeian, P.L. Martelli, G. Profiti, R. Casadio, R. Cao, Z. Zhong, J. Cheng, A. Altenhoff, N. Skunca, C. Dessimoz, T. Dogan, K. Hakala, S. Kaewphan, F. Mehryary, T. Salakoski, F. Ginter, H. Fang, B. Smithers, M. Oates, J. Gough, P. Törönen, P. Koskinen, L. Holm, C. Chen, W. Hsu, K. Bryson, D. Cozzetto, F. Minneci, D.T. Jones, S. Chapman, D. Bkc, I.K. Khan, D. Kihara, D. Ofer, N. Rappoport, A. Stern, E. Cibrian-Uhalte, P. Denny, R.E. Foulger, R. Hieta, D. Legge, R.C. Lovering, M. Magrane, A.N. Melidoni, P. Mutowo-Meullenet, K. Pichler, A. Shypitsyna, B. Li, P. Zakeri, S. Elshal, L. Tranchevent, S. Das, N.L. Dawson, D. Lee, J.G. Lees, I. Sillitoe, P. Bhat, T. Nepusz, A.E. Romero, R. Sasidharan, H. Yang, A. Paccanaro, J. Gillis, A.E. Sedeño-Cortés, P. Pavlidis, S. Feng, J.M. Cejuela, T. Goldberg, T. Hamp, L. Richter, A. Salamov, T. Gabaldon, M. Marcet-Houben, F. Supek, Q. Gong, W. Ning, Y. Zhou, W. Tian, M. Falda, P. Fontana, E. Lavezzo, S. Toppo, C. Ferrari, M. Giollo, D. Piovesan, S.C.E. Tosatto, A. del Pozo, J.M. Fernández, P. Maietta, A. Valencia, M.L. Tress, A. Benso, S. Di Carlo, G. Politano, A. Savino, H.U. Rehman, M. Re, M. Mesiti, G. Valentini, J.W. Bargsten, A.D..J. van Dijk, B. Gemovic, S. Glisic, V. Perovic, V. Veljkovic, N. Veljkovic, D.C. Almeida-e-Silva, R.Z..N. Vencio, M. Sharan, J. Vogel, L. Kansakar, S. Zhang, S. Vucetic, Z. Wang, M.J..E. Sternberg, M.N. Wass, R.P. Huntley, M.J. Martin, C. O’Donovan, P.N. Robinson, Y. Moreau, A. Tramontano, P.C. Babbitt, S.E. Brenner, M. Linial, C.A. Orengo, B. Rost, C.S. Greene, S.D. Mooney, I. Friedberg, P. Radivojac
An experimental comparison of Hierarchical Bayes and True Path Rule ensembles for protein function prediction
2010 M. Re, G. Valentini
An extensive analysis of disease-gene associations using network integration and fast kernel-based gene prioritization methods
2014 G. Valentini, A. Paccanaro, H. Caniza, A.E. Romero, M. Re
Analysis of bio-molecular networks through semi-supervised graph-based learning methods
2014 M. Re, M. Mesiti, M. Frasca, J. Lin, G. Valentini
Cancer module genes ranking using kernelized score functions
2012 M. Re, G. Valentini
Comparing early and late data fusion methods for gene function prediction
2009 M. Re, G. Valentini
Comparison of early and late omics data integration for cancer modules gene ranking
2012 M. Re, M. Mesiti, G. Valentini
Data fusion based gene function prediction using ensemble methods
2009 M. Re, G. Valentini
Detecting conserved coding genomic regions through signal processing of nucleotide substitution patterns
2009 M. Ré, G. Pavesi