CASIRAGHI, ELENA
CASIRAGHI, ELENA
Dipartimento di Informatica Giovanni Degli Antoni
Intrinsic-dimension analysis for guiding dimensionality reduction and data fusion in multi-omics data processing
2025 J. Gliozzo, M. Soto-Gomez, V. Guarino, A. Bonometti, A. Cabri, E. Cavalleri, J. Reese, P.N. Robinson, M. Mesiti, G. Valentini, E. Casiraghi
The Use of Artificial Intelligence in Head and Neck Cancers: A Multidisciplinary Survey
2024 C. Giannitto, G. Carnicelli, S. Lusi, A. Ammirabile, E. Casiraghi, A. De Virgilio, A. Esposito, D. Farina, F. Ferreli, C. Franzese, G.M. Frigerio, A. Lo Casto, L. Malvezzi, L. Lorini, A. Othman, L. Preda, M. Scorsetti, P. Bossi, G. Mercante, G. Spriano, L. Balzarini, M. Francone
SPIREX: Improving LLM-based relation extraction from RNA-focused scientific literature using graph machine learning
2024 E. Cavalleri, M. Soto Gomez, A. Pashaeibarough, D. Malchiodi, J.H. Caufield, J.T. Reese, C. Mungall, P.N. Robinson, E. Casiraghi, G. Valentini, M. Mesiti
An open source knowledge graph ecosystem for the life sciences
2024 T.J. Callahan, I.J. Tripodi, A.L. Stefanski, L. Cappelletti, S.B. Taneja, J.M. Wyrwa, E. Casiraghi, N.A. Matentzoglu, J. Reese, J.C. Silverstein, C.T. Hoyt, R.D. Boyce, S.A. Malec, D.R. Unni, M.P. Joachimiak, P.N. Robinson, C.J. Mungall, E. Cavalleri, T. Fontana, G. Valentini, M. Mesiti, L.A. Gillenwater, B. Santangelo, N.A. Vasilevsky, R. Hoehndorf, T.D. Bennett, P.B. Ryan, G. Hripcsak, M.G. Kahn, M. Bada, W.A. Baumgartner, L.E. Hunter
Fine-tuning of Conditional Transformers Improves the Generalization of Functionally Characterized Proteins
2024 M. Nicolini, D. Malchiodi, A. Cabri, E. Cavalleri, M. Mesiti, A. Paccanaro, N. Robinson Peter, J. Reese, E. Casiraghi, G. Valentini
Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning
2024 L. Cappelletti, L. Rekerle, T. Fontana, P. Hansen, E. Casiraghi, V. Ravanmehr, C.J. Mungall, J. Yang, L. Spranger, G. Karlebach, J.H. Caufield, L. Carmody, B. Coleman, T. Oprea, J. Reese, G. Valentini, P.N. Robinson
Association of post-COVID phenotypic manifestations with new-onset psychiatric disease
2024 B. Coleman, E. Casiraghi, T.J. Callahan, H. Blau, L.E. Chan, B. Laraway, K.B. Clark, Y. Re’Em, K.R. Gersing, K.J. Wilkins, N.L. Harris, G. Valentini, M.A. Haendel, J.T. Reese, P.N. Robinson
RNA Knowledge Graph Analysis via Embedding Methods
2024 F. Torgano, E. Cavalleri, J. Gliozzo, F. Stacchietti, E. Saitto, M. Mesiti, E. Casiraghi, G. Valentini
Chemical Reaction Enhanced Graph Learning for Molecule Representation
2024 A. Li, E. Casiraghi, J. Rousu
Unbiased clustering and molecular characterisation of novel metabolic phenotypes in a heart failure cohort
2024 E. Esenkova, T. Koeck, G. Valentini, P. Wild, E. Casiraghi, E. Araldi
Cancer-associated foam cells hamper protective T cell immunity and favor tumor progression in human colon carcinogenesis
2024 E. Daveri, B. Vergani, L. Lalli, G. Ferrero, E. Casiraghi, A. Cova, M. Zorza, V. Huber, M. Gariboldi, P. Pasanisi, S. Guarrera, D. Morelli, F. Arienti, M. Vitellaro, P.A. Corsetto, A.M. Rizzo, M. Stroscia, P. Frati, V. Lagano, L. Cattaneo, G. Sabella, B.E. Leone, M. Milione, L. Sorrentino, L. Rivoltini
Fine-Tuning of Conditional Transformers Improves the Generation of Functionally Characterized Proteins
2024 M. Nicolini, D. Malchiodi, A. Cabri, E. Cavalleri, M. Mesiti, A. Paccanaro, P.N. Robinson, J. Reese, E. Casiraghi, G. Valentini
Spatial distribution of tumour immune infiltrate predicts outcomes of patients with high-risk soft tissue sarcomas after neoadjuvant chemotherapy
2024 S. Pasquali, V. Vallacchi, L. Lalli, P. Collini, M. Barisella, C. Romagosa, S. Bague, J.M. Coindre, A.P. Dei Tos, E. Palmerini, V. Quagliuolo, J. Martin-Broto, A. Lopez-Pousa, G. Grignani, J.-. Blay, R.D. Beveridge, E. Casiraghi, S. Brich, S.L. Renne, L. Bergamaschi, B. Vergani, M. Sbaraglia, P.G. Casali, L. Rivoltini, S. Stacchiotti, A. Gronchi
An ontology-based knowledge graph for representing interactions involving RNA molecules
2024 E. Cavalleri, A. Cabri, M. Soto-Gomez, S. Bonfitto, P. Perlasca, J. Gliozzo, T.J. Callahan, J. Reese, P.N. Robinson, E. Casiraghi, G. Valentini, M. Mesiti
Towards the Construction of an RNA-based Knowledge Graph
2023 E. Cavalleri, S. Bonfitto, A. Cabri, J. Gliozzo, P. Perlasca, M. Soto-Gomez, G. Trucco, E. Casiraghi, G. Valentini, M. Mesiti
The promises of large language models for protein design and modeling
2023 G. Valentini, D. Malchiodi, J. Gliozzo, M. Mesiti, M. Soto Gomez, A. Cabri, J. Reese, E. Casiraghi, P.N. Robinson
A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph
2023 E. Cavalleri, S. Bonfitto, A. Cabri, J. Gliozzo, P. Perlasca, M. Soto-Gomez, G. Trucco, E. Casiraghi, G. Valentini, M. Mesiti
RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules
2023 E. Cavalleri, A. Cabri, M. Soto-Gomez, S. Bonfitto, P. Perlasca, J. Gliozzo, T.J. Callahan, J. Reese, P. N Robinson, E. Casiraghi, G. Valentini, M. Mesiti
Image-Guided Intraoperative Assessment of Surgical Margins in Oral Cavity Squamous Cell Cancer: A Diagnostic Test Accuracy Review
2023 G. Carnicelli, L. Disconzi, M. Cerasuolo, E. Casiraghi, G. Costa, A. De Virgilio, A.A. Esposito, F. Ferreli, F. Fici, A. Lo Casto, S. Marra, L. Malvezzi, G. Mercante, G. Spriano, G. Torzilli, M. Francone, L. Balzarini, C. Giannitto
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes
2023 J.T. Reese, H. Blau, E. Casiraghi, T. Bergquist, J.J. Loomba, T.J. Callahan, B. Laraway, C. Antonescu, B. Coleman, M. Gargano, K.J. Wilkins, L. Cappelletti, T. Fontana, N. Ammar, B. Antony, T.M. Murali, J.H. Caufield, G. Karlebach, J.A. Mcmurry, A. Williams, R. Moffitt, J. Banerjee, A.E. Solomonides, H. Davis, K. Kostka, G. Valentini, D. Sahner, C.G. Chute, C. Madlock-Brown, M.A. Haendel, P.N. Robinson, H. Spratt, S. Visweswaran, J.E. Flack, Y.J. Yoo, D. Gabriel, G.C. Alexander, H.B. Mehta, F. Liu, R.T. Miller, R. Wong, E.L. Hill, L.E. Thorpe, J. Divers