NOTARO, MARCO
NOTARO, MARCO
Dipartimento di Informatica Giovanni Degli Antoni
Integration and Visual Analysis of Biomolecular Networks Through UNIPred-Web
2023 P. Perlasca, M. Frasca, C.T. Ba, J. Gliozzo, M. Notaro, M. Pennacchioni, G. Valentini, M. Mesiti
A method for comparing multiple imputation techniques: a case study on the U.S. National COVID Cohort Collaborative
2023 E. Casiraghi, R. Wong, M. Hall, B. Coleman, M. Notaro, M.D. Evans, J.S. Tronieri, H. Blau, B. Laraway, T.J. Callahan, L.E. Chan, C.T. Bramante, J.B. Buse, R.A. Moffitt, T. Stürmer, S.G. Johnson, Y. Raymond Shao, J. Reese, P.N. Robinson, A. Paccanaro, G. Valentini, J.D. Huling, K.J. Wilkins
ParSMURF-NG: A Machine Learning High Performance Computing System for the Analysis of Imbalanced Big Omics Data
2022 A. Petrini, M. Notaro, J. Gliozzo, T. Castrignanò, P.N. Robinson, E. Casiraghi, G. Valentini
Heterogeneous data integration methods for patient similarity networks
2022 J. Gliozzo, M. Mesiti, M. Notaro, A. Petrini, A. Patak, A. Puertas-Gallardo, A. Paccanaro, G. Valentini, E. Casiraghi
FZD6 triggers Wnt-signalling driven by WNT10BIVS1 expression and highlights new targets in T cell acute lymphoblastic leukemia
2021 A. Cassaro, G. Grillo, M. Notaro, J. Gliozzo, I. Esposito, G. Reda, A. Trojani, G. Valentini, B. Di Camillo, R. Cairoli, A. Beghini
HEMDAG: a family of modular and scalable hierarchical ensemble methods to improve Gene Ontology term prediction
2021 M. Notaro, M. Frasca, A. Petrini, J. Gliozzo, E. Casiraghi, P.N. Robinson, G. Valentini
A Graphical Tool for the Exploration and Visual Analysis of Biomolecular Networks
2020 C.T. Ba, E. Casiraghi, M. Frasca, J. Gliozzo, G. Grossi, M. Mesiti, M. Notaro, P. Perlasca, A. Petrini, M. Re', G. Valentini
Multi-resolution visualization and analysis of biomolecular networks through hierarchical community detection and web-based graphical tools
2020 P. Perlasca, M. Frasca, C.T. Ba, J. Gliozzo, M. Notaro, M. Pennacchioni, G. Valentini, M. Mesiti
Ensembling Descendant Term Classifiers to Improve Gene : Abnormal Phenotype Predictions
2019 M. Notaro, M. Schubach, M. Frasca, M. Mesiti, P.N. Robinson, G. Valentini
Disease–Genes Must Guide Data Source Integration in the Gene Prioritization Process
2019 M. Frasca, J.F. Fontaine, G. Valentini, M. Mesiti, M. Notaro, D. Malchiodi, M.A. Andrade-Navarro
HIERARCHICAL ENSEMBLE METHODS FOR ONTOLOGY-BASED PREDICTIONS IN COMPUTATIONAL BIOLOGY
2019 M. Notaro
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
2019 N. Zhou, Y. Jiang, T.R. Bergquist, A.J. Lee, B.Z. Kacsoh, A.W. Crocker, K.A. Lewis, G. Georghiou, H.N. Nguyen, M.N. Hamid, L. Davis, T. Dogan, V. Atalay, A.S. Rifaioglu, A. Dalklran, R. Cetin Atalay, C. Zhang, R.L. Hurto, P.L. Freddolino, Y. Zhang, P. Bhat, F. Supek, J.M. Fernandez, B. Gemovic, V.R. Perovic, R.S. Davidovic, N. Sumonja, N. Veljkovic, E. Asgari, M.R.K. Mofrad, G. Profiti, C. Savojardo, P.L. Martelli, R. Casadio, F. Boecker, H. Schoof, I. Kahanda, N. Thurlby, A.C. Mchardy, A. Renaux, R. Saidi, J. Gough, A.A. Freitas, M. Antczak, F. Fabris, M.N. Wass, J. Hou, J. Cheng, Z. Wang, A.E. Romero, A. Paccanaro, H. Yang, T. Goldberg, C. Zhao, L. Holm, P. Toronen, A.J. Medlar, E. Zosa, I. Borukhov, I. Novikov, A. Wilkins, O. Lichtarge, P.-. Chi, W.-. Tseng, M. Linial, P.W. Rose, C. Dessimoz, V. Vidulin, S. Dzeroski, I. Sillitoe, S. Das, J.G. Lees, D.T. Jones, C. Wan, D. Cozzetto, R. Fa, M. Torres, A. Warwick Vesztrocy, J.M. Rodriguez, M.L. Tress, M. Frasca, M. Notaro, G. Grossi, A. Petrini, M. Re, G. Valentini, M. Mesiti, D.B. Roche, J. Reeb, D.W. Ritchie, S. Aridhi, S.Z. Alborzi, M.-. Devignes, D.C.E. Koo, R. Bonneau, V. Gligorijevic, M. Barot, H. Fang, S. Toppo, E. Lavezzo, M. Falda, M. Berselli, S.C.E. Tosatto, M. Carraro, D. Piovesan, H. Ur Rehman, Q. Mao, S. Zhang, S. Vucetic, G.S. Black, D. Jo, E. Suh, J.B. Dayton, D.J. Larsen, A.R. Omdahl, L.J. Mcguffin, D.A. Brackenridge, P.C. Babbitt, J.M. Yunes, P. Fontana, F. Zhang, S. Zhu, R. You, Z. Zhang, S. Dai, S. Yao, W. Tian, R. Cao, C. Chandler, M. Amezola, D. Johnson, J.-. Chang, W.-. Liao, Y.-. Liu, S. Pascarelli, Y. Frank, R. Hoehndorf, M. Kulmanov, I. Boudellioua, G. Politano, S. Di Carlo, A. Benso, K. Hakala, F. Ginter, F. Mehryary, S. Kaewphan, J. Bjorne, H. Moen, M.E.E. Tolvanen, T. Salakoski, D. Kihara, A. Jain, T. Smuc, A. Altenhoff, A. Ben-Hur, B. Rost, S.E. Brenner, C.A. Orengo, C.J. Jeffery, G. Bosco, D.A. Hogan, M.J. Martin, C. O'Donovan, S.D. Mooney, C.S. Greene, P. Radivojac, I. Friedberg
UNIPred-Web : a web tool for the integration and visualization of biomolecular networks for protein function prediction
2019 P. Perlasca, M. Frasca, C.T. Ba, M. Notaro, A. Petrini, E. Casiraghi, G. Grossi, J. Gliozzo, G. Valentini, M. Mesiti
A GPU-based algorithm for fast node label learning in large and unbalanced biomolecular networks
2018 M. Frasca, G. Grossi, J. Gliozzo, M. Mesiti, M. Notaro, P. Perlasca, A. Petrini, G. Valentini
Speeding up node label learning in unbalanced biomolecular networks through a parallel and sparse GPUbased Hopfield model
2017 A. Petrini, M. Notaro, J. Gliozzo, G. Valentini, G. Grossi, M. Frasca
Modeling biomolecular profiles in a graph-structured sample space for clinical outcome prediction with melanoma and ovarian cancer patients
2017 J. Gliozzo, M. Notaro, A. Petrini, P. Perlasca, M. Mesiti, E. Casiraghi, M. Frasca, G. Grossi, M. Re, A. Paccanaro, G. Valentini
A Web Graphical Tool for the Integration of Unbalanced Biomolecular Networks
2017 P. Perlasca, M. Mesiti, M. Notaro, A. Petrini, J. Gliozzo, G. Valentini, M. Frasca
Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
2017 M. Notaro, M. Schubach, P.N. Robinson, G. Valentini
Prediction of human gene - phenotype associations by exploiting the hierarchical structure of the human phenotype ontology
2015 G. Valentini, S. Köhler, M. Re, M. Notaro, P.N. Robinson
A Hierarchical Ensemble Method for DAG-Structured Taxonomies
2015 P.N. Robinson, M. Frasca, S. Köhler, M. Notaro, M. Re, G. Valentini