CAPELLI, RICCARDO
CAPELLI, RICCARDO
Dipartimento di Bioscienze
Electric Field-Induced Destabilization and Surface Modulation of Aβ42 Fibrils in Molecular Simulations: Theoretical Implications for DC Stimulation in Alzheimer’s Disease
2026 F. Bacic Toplek, N.V. Maiorana, M. Guidetti, S. Marceglia, R. Capelli, A. Priori, C. Camilloni
Kinetic rate calculation via non-equilibrium dynamics
2025 B. Stegani, R. Capelli
A Mg‐Chelatase Subunit I Missense Mutant in Barley Exhibits a Cold‐Sensitive Phenotype Under Field Conditions
2025 A. Persello, V. Torricella, F. Ballabio, C. Bertaso, L. Rotasperti, N. Jeran, S. Masiero, N.G. Capra, R. Capelli, C. Camilloni, L. Rossini, D.S. Horner, F. Camerlengo, G. Sangiorgi, A. Krieger‐liszkay, S. Petrac, L. Tadini, B. Grimm, P. Pesaresi
The standard coil or globule phases cannot describe the denatured state of structured proteins and intrinsically disordered proteins
2025 F. Righini, G. Potel, R. Capelli, G. Tiana
Multi-ego: A Structure-based Framework for Molecular Simulations
2025 R. Capelli, B. Stegani, F. Bacic Toplek, E. Scalone, C. Camilloni
Unveiling an unexpected redox regulation of the folding, function and inhibition in the phosphotyrosine binding domain of FRS2
2025 V. Pennacchietti, L. Pagano, M. Di Felice, J. Toso, M. Bufano, A. Coluccia, R. Silvestri, R. Capelli, C. Camilloni, F. Malagrinò, A. Toto, S. Gianni
Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision Repair
2025 M. Genta, G. Ferrara, R. Capelli, D. Rondelli, S. Sertic, M. Bolognesi, M. Rizzi, F. Rossi, D. Jeruzalmi, A. Chaves-Sanjuan, R. Miggiano
Constant-pH simulation of the human β2 adrenergic receptor inactivation
2025 F. Ballabio, R. Capelli
PLUMED Tutorials: A collaborative, community-driven learning ecosystem
2025 G.A. Tribello, M. Bonomi, G. Bussi, C. Camilloni, B.I. Armstrong, A. Arsiccio, S. Aureli, F. Ballabio, M. Bernetti, L. Bonati, S.G.H. Brookes, Z.F. Brotzakis, R. Capelli, M. Ceriotti, K. Chan, P. Cossio, S. Dasetty, D. Donadio, B. Ensing, A.L. Ferguson, G. Fraux, J.D. Gale, F.L. Gervasio, T. Giorgino, N.S.M. Herringer, G.M. Hocky, S.E. Hoff, M. Invernizzi, O. Languin-Cattoën, V. Leone, V. Limongelli, O. Lopez-Acevedo, F. Marinelli, P. Febrer Martinez, M. Masetti, S. Mehdi, A. Michaelides, M.H. Murtada, M. Parrinello, P.M. Piaggi, A. Pietropaolo, F. Pietrucci, S. Pipolo, C. Pritchard, P. Raiteri, S. Raniolo, D. Rapetti, V. Rizzi, J. Rydzewski, M. Salvalaglio, C. Schran, A. Seal, A. Shayesteh Zadeh, T.F.D. Silva, V. Spiwok, G. Stirnemann, D. Sucerquia, P. Tiwary, O. Valsson, M. Vendruscolo, G.A. Voth, A.D. White, J. Wu
Estimation of Ligand Binding Free Energy Using Multi-eGO
2025 B. Stegani, E. Scalone, F. Bacic Toplek, T. Löhr, S. Gianni, M. Vendruscolo, R. Capelli, C. Camilloni
Affibodies as valuable tool to prevent β2m aggregation under lysosomal-like conditions
2025 C. Visentin, G. Rizzi, Y. Wen, M. Hotot, D. Roy, T. Gräslund, R. Capelli, S. Ricagno
Circular oligomeric particles formed by Ros/MucR family members mediate DNA organization in α-proteobacteria
2024 A. Chaves-Sanjuan, G. D’Abrosca, V. Russo, B. Van Erp, A. Del Cont Bernard, R. Capelli, L. Pirone, M. Slapakova, D. Sgambati, R. Fattorusso, C. Isernia, L. Russo, I.S. Barton, R. Martin Roop, E.M. Pedone, M. Bolognesi, R.T. Dame, P.V. Pedone, M. Nardini, G. Malgieri, I. Baglivo
A PDZ tandem repeat folds and unfolds via different pathways
2024 V. Pennacchietti, S. Di Matteo, L. Pagano, F. Bacic Toplek, B. Stegani, A. Toto, J. Toso, E. Puglisi, R. Capelli, M. Di Felice, F. Malagrinò, C. Camilloni, S. Gianni
Proton Affinity and Conformational Integrity of a 24-Atom Triazine Macrocycle across Physiologically Relevant pH
2024 A.J. Menke, Z.P. Jacobus, L.E. Claton, O. Annunziata, R. Capelli, G.M. Pavan, E.E. Simanek
Calcium-Driven In Silico Inactivation of a Human Olfactory Receptor
2024 L. Pirona, F. Ballabio, M. Alfonso-Prieto, R. Capelli
Multi-eGO: Model Improvements toward the Study of Complex Self-Assembly Processes
2024 F. Bacic Toplek, E. Scalone, B. Stegani, C. Paissoni, R. Capelli, C. Camilloni
Predictions of the Poses and Affinity of a Ligand over the Entire Surface of a NEET Protein: The Case of Human MitoNEET
2023 K. Zuo, R. Capelli, G. Rossetti, R. Nechushtai, P. Carloni
Computational Epitope Prediction and Design for Antibody Development and Detection
2023 R. Capelli, S.A. Serapian, G. Colombo
Machine Learning-Based Modeling of Olfactory Receptors in Their Inactive State: Human OR51E2 as a Case Study
2023 M. Alfonso-Prieto, R. Capelli
Metadynamics simulations of ligands binding to protein surfaces: a novel tool for rational drug design
2023 K. Zuo, A. Kranjc, R. Capelli, G. Rossetti, R. Nechushtai, P. Carloni