CHIARA, MATTEO
CHIARA, MATTEO
Dipartimento di Bioscienze
A novel group of IncQ1 plasmids conferring multidrug resistance
2017 M. Oliva, R. Monno, P. D'Addabbo, G. Pesole, A.M. Dionisi, M. Scrascia, M. Chiara, D.S. Horner, C. Manzari, I. Luzzi, C. Calia, A.M. D'Erchia, C. Pazzani
A-GAME : improving the assembly of pooled functional metagenomics sequence data
2018 M. Chiara, A. Placido, E. Picardi, L.R. Ceci, D.S. Horner, G. Pesole
Accurate detection of genomic structural variations using high throughput resequencing data
2011 M. Chiara, G. Pesole, H.S. Horner
Alginate coating modifies the biological effects of cerium oxide nanoparticles to the freshwater bivalve Dreissena polymorpha
2021 C. Della Torre, D. Maggioni, L. Nigro, F. Farè, H. Hamza, G. Protano, S. Magni, M. Fontana, N. Riccardi, M. Chiara, D. Caruso, A. Binelli
Aortic gene expression profiles show how ApoA-I levels modulate inflammation, lysosomal activity, and sphingolipid metabolism in murine atherosclerosis
2021 M. Busnelli, S. Manzini, M. Chiara, A. Colombo, F. Fontana, R. Oleari, F. Poti, D. Horner, S. Bellosta, G. Chiesa
Ascan: a novel method for the study of allele specific expression in single individuals
2021 F. Zambelli, M. Chiara, E. Ferrandi, P. Mandreoli, M. Antonio Tangaro, G. Pavesi, G. Pesole
BIOINFORMATIC TOOLS FOR NEXT GENERATION GENOMICS
2012 M. Chiara
BPC transcription factors and a Polycomb Group protein confine the expression of the ovule identity gene SEEDSTICK in Arabidodpsis
2020 R. PETRELLA, F. CASELLI, I. ROIG VILLANOVA, V. Vignati, M. CHIARA, E. Ignacio, L. TADINI, M. KATER, V. GREGIS
Characterizing Structural Variation in Genomes (from humans to crops)
2011 M. Chiara, D.S. Horner
Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer
2015 M. Chiara, M. Caruso, A.M. D'Erchia, C. Manzari, R. Fraccalvieri, E. Goffredo, L. Latorre, A. Miccolupo, I. Padalino, G. Santagada, D. Chiocco, G. Pesole, D.S. Horner, A. Parisi
Comparative genomics provides an operational classification system and reveals early emergence and biased spatio-temporal distribution of SARS-CoV-2
2020 M. Chiara, D.S. Horner, C. Gissi, G. Pesole
Comparative genomics reveals early emergence and biased spatio-temporal distribution of SARS-CoV-2
2021 M. Chiara, D.S. Horner, C. Gissi, G. Pesole
Comparative genomics suggests a taxonomic revision of the Staphylococcus cohnii species complex
2021 A. Lavecchia, M. Chiara, C. De Virgilio, C. Manzari, C. Pazzani, D. Horner, G. Pesole, A. Placido
Comparative genomics suggests limited variability and similar evolutionary patterns between major clades of SARS-CoV-2
2020 M. Chiara, D.S. Horner, C. Gissi, G. Pesole
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
2021 G. Formenti, A. Rhie, J. Balacco, B. Haase, J. Mountcastle, O. Fedrigo, S. Brown, M.R. Capodiferro, F.O. Al-Ajli, R. Ambrosini, P. Houde, S. Koren, K. Oliver, M. Smith, J. Skelton, E. Betteridge, J. Dolucan, C. Corton, I. Bista, J. Torrance, A. Tracey, J. Wood, M. Uliano-Silva, K. Howe, S. McCarthy, S. Winkler, W. Kwak, J. Korlach, A. Fungtammasan, D. Fordham, V. Costa, S. Mayes, M. Chiara, D.S. Horner, E. Myers, R. Durbin, A. Achilli, E.L. Braun, A.M. Phillippy, E.D. Jarvis, A.N.G. Kirschel, A. Digby, A. Veale, A. Bronikowski, B. Murphy, B. Robertson, C. Baker, C. Mazzoni, C. Balakrishnan, C. Lee, D. Mead, E. Teeling, E.L. Aiden, E. Todd, E. Eichler, G.J.P. Naylor, G. Zhang, J. Smith, J. Wolf, J. Touchon, K. Delmore, K. Jakobsen, L. Komoroske, M. Wilkinson, M. Genner, M. Psenicka, M. Fuxjager, M. Stratton, M. Liedvogel, N. Gemmell, P. Minias, P.O. Dunn, P. Sudmant, P. Morin, Q. Ayub, R. Kraus, S. Vernes, S. Smith, T. Lama, T. Edwards, T. Smith, T. Gilbert, T. Marques-Bonet, T. Einfeldt, B. Venkatesh, W. Johnson, W. Warren, Y. Bukhman
CONSTANS imparts DNA sequence specificity to the histone fold NF-YB/NF-YC dimer
2017 N. Gnesutta, R.W. Kumimoto, S. Swain, M. Chiara, C. Siriwardana, D.S. Horner, B.F. Holt, R. Mantovani
CorGAT : a tool for the functional annotation of SARS-CoV-2 genomes
2020 M. Chiara, F. Zambelli, M.A. Tangaro, P. Mandreoli, D.S. Horner, G. Pesole
Corrigendum: No change in the mucosal gut microbiome is associated with celiac disease-specific microbiome alteration in adult patients (American Journal of Gastroenterology (2016) 111 (1659-1661) DOI: 10.1038/ajg.2016.227)
2017 V. D'Argenio, G. Casaburi, V. Precone, C. Pagliuca, R. Colicchio, D. Sarnataro, V. Discepolo, S.M. Kim, I. Russo, G. Del Vecchio Blanco, D.S. Horner, M. Chiara, G. Pesole, P. Salvatore, G. Monteleone, C. Ciacci, G.J. Caporaso, B. Jabrì, F. Salvatore, L. Sacchetti
CoVaCS : a consensus variant calling system
2018 M. Chiara, S. Gioiosa, G. Chillemi, M. D'Antonio, T. Flati, E. Picardi, F. Zambelli, D.S. Horner, G. Pesole, T. Castrignanò
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data
2019 M. Chiara, F. Zambelli, E. Picardi, D.S. Horner, G. Pesole