CHIARA, MATTEO
CHIARA, MATTEO
Dipartimento di Bioscienze
Integrating single nuclei and bulk RNA sequencing in rice shoot apical meristems uncovers candidate early floral transition gene networks
2025 D. Traversa, G. Vicentini, P.K. Krukowski, L. Conti, M. Chiara, V. Brambilla
Mapping Cell Identity from scRNA-seq: A primer on computational methods
2025 D. Traversa, M. Chiara
mapPat: tracking pathogens evolution in space and time
2025 E. Ferrandi, G. Pesole, M. Chiara
Mutations in HEADING DATE 1 affect transcription and cell wall composition in rice
2025 M. Biancucci, D. Chirivì, A. Baldini, E. Badenhorst, F. Dobetti, B. Khahani, E. Formentin, T. Eguen, F. Turck, J. P Moore, E. Tavakol, S. Wenkel, F. Lo Schiavo, I. Ezquer, V. Brambilla, D. Horner, M. Chiara, G. Perrella, C. Betti, F. Fornara
De Novo Assembly of the Polyhydroxybutyrate (PHB) Producer Azohydromonas lata Strain H1 Genome and Genomic Analysis of PHB Production Machinery
2025 D. Traversa, C. Pazzani, P. D'Addabbo, L. Trisolini, M. Chiara, M. Oliva, A. Marzella, C. Mandorino, C. Calia, G. Chimienti, C. Manzari, G. Pesole, M. Scrascia
The {"}Investigating and translating genomic evidence for public health response to SARS-CoV-2 (INSIDE SARS-CoV-2){"} project - Network of excellence. Commentary
2024 A. Di Martino, S. Bhattacharyya, F. Riccardo, R. Pandey, M. Chiara, S. Mani, P. Pezzotti, A. Lo Presti, L. Ambrosio, V. Marziano, P. Poletti, G. Pesole, J. Narayan, M. Brijwal, A. Choudhary, F. Tramuto, W. Mazzucco, A. Agrawal, A. Mohan, P. Stefanelli
Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue
2024 S.N. Cox, C. Lo Giudice, A. Lavecchia, M.L. Poeta, M. Chiara, E. Picardi, G. Pesole
Data-driven recombination detection in viral genomes
2024 T. Alfonsi, A. Bernasconi, M. Chiara, S. Ceri
AIEC-dependent pathogenic Th17 cell transdifferentiation in Crohn's disease is suppressed by rfaP and ybaT deletion
2024 G. Leccese, M. Chiara, I. Dusetti, D. Noviello, E. Billard, A. Bibi, G. Conte, C. Consolandi, M. Vecchi, M.P. Conte, N. Barnich, F. Caprioli, F. Facciotti, M. Paroni
The pancancer overexpressed NFYC Antisense 1 controls cell cycle mitotic progression through in cis and in trans modes of action
2024 C. Pandini, G. Pagani, M. Tassinari, E. Vitale, E. Bezzecchi, M.K. Saadeldin, V. Doldi, G. Giannuzzi, R. Mantovani, M. Chiara, A. Ciarrocchi, P. Gandellini
Development of a state of the art computational environment for handling human genetic data : the effort of ELIXIR-IT
2024 C. Lo Giudice, F. Licciulli, G. Miniello, M. Moscatelli, S.N. Cox, A.S. Varvara, B. Fosso, M.A. Tangaro, R. Cilli, D. Traversa, G. Donvito, E. Capriotti, M. Chiara, F. Zambelli, G. Pesole
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
2024 A.M. Mc Cartney, G. Formenti, A. Mouton, D. De Panis, L.S. Marins, H.G. Leitão, G. Diedericks, J. Kirangwa, M. Morselli, J. Salces-Ortiz, N. Escudero, A. Iannucci, C. Natali, H. Svardal, R. Fernández, T. De Pooter, G. Joris, M. Strazisar, J.M.D. Wood, K.E. Herron, O. Seehausen, P.C. Watts, F. Shaw, R.P. Davey, A. Minotto, J.M. Fernández, A. Böhne, C. Alegria, T. Alioto, P.C. Alves, I.R. Amorim, J. Aury, N. Backstrom, P. Baldrian, L. Baltrunaite, E. Barta, B. Bedhom, C. Belser, J. Bergsten, L. Bertrand, H. Bilandija, M. Binzer-Panchal, I. Bista, M. Blaxter, P.A.V. Borges, G.B. Dias, M. Bosse, T. Brown, R. Bruggmann, E. Buena-Atienza, J. Burgin, E. Buzan, A. Cariani, N. Casadei, M. Chiara, S. Chozas, F. Čiampor, A. Crottini, C. Cruaud, F. Cruz, L. Dalen, A. De Biase, J. Del Campo, T. Delic, A.B. Dennis, M.F.L. Derks, M.A. Diroma, M. Djan, S. Duprat, K. Eleftheriadi, P.G.D. Feulner, J. Flot, G. Forni, B. Fosso, P. Fournier, C. Fournier-Chambrillon, T. Gabaldon, S. Garg, C. Gissi, L. Giupponi, J. Gomez-Garrido, J. González, M.L. Grilo, B. Grüning, T. Guerin, N. Guiglielmoni, M. Gut, M.P. Haesler, C. Hahn, B. Halpern, P.W. Harrison, J. Heintz, M. Hindrikson, J. Höglund, K. Howe, G.M. Hughes, B. Istace, M.J. Cock, F. Janžekovič, Z.O. Jonsson, S. Joye-Dind, J.J. Koskimäki, B. Krystufek, J. Kubacka, H. Kuhl, S. Kusza, K. Labadie, M. Lähteenaro, H. Lantz, A. Lavrinienko, L. Leclère, R.J. Lopes, O. Madsen, G. Magdelenat, G. Magoga, T. Manousaki, T. Mappes, J.P. Marques, G.I.M. Redondo, F. Maumus, S.A. Mccarthy, H. Megens, J. Melo-Ferreira, S.L. Mendes, M. Montagna, J. Moreno, M. Mosbech, M. Moura, Z. Musilova, E. Myers, W.J. Nash, A. Nater, P. Nicholson, M. Niell, R. Nijland, B. Noel, K. Noren, P.H. Oliveira, R. Olsen, L. Ometto, R.A. Oomen, S. Ossowski, V. Palinauskas, S. Palsson, J.P. Panibe, J. Pauperio, M. Pavlek, E. Payen, J. Pawlowska, J. Pellicer, G. Pesole, J. Pimenta, M. Pippel, A.M. Pirttilä, N. Poulakakis, J. Rajan, R. M. C. Rego, R. Resendes, P. Resl, A. Riesgo, P. Rodin-Morch, A.E.R. Soares, C.R. Fernandes, M.M. Romeiras, G. Roxo, L. Rüber, M.J. Ruiz-Lopez, U. Saarma, L.P. Da Silva, M. Sim-Sim, L. Soler, V.C. Sousa, C.S. Santos, A. Spada, M. Stefanovic, V. Steger, J. Stiller, M. Stöck, T.H. Struck, H. Sudasinghe, R. Tapanainen, C. Tellgren-Roth, H. Trindade, Y. Tukalenko, I. Urso, B. Vacherie, S.M. Van Belleghem, K. Van Oers, C. Vargas-Chavez, N. Velickovic, N. Vella, A. Vella, C. Vernesi, S. Vicente, S. Villa, O.V. Pettersson, F.A.M. Volckaert, J. Voros, P. Wincker, S. Winkler, C. Ciofi, R.M. Waterhouse, C.J. Mazzoni
NFYA alternative cleavage and polyadenylation in cancer
2023 G. Pagani, S. Fornezza, C. Pandini, C. Ferrari, M. Chiara, P. Gandellini
The pancancer overexpressed and cell cycle regulated NFYC antisense 1 controls tumor E2F/MYC proliferation programs through in cis and in trans modes of action
2023 C. Pandini, G. Pagani, M. Tassinari, E. Vitale, E. Bezzecchi, V. Doldi, K. Saadeldin, F. Rotundo, M. Chiara, A. Ciarrocchi, P. Gandellini
NFYA alternative cleavage and polyadenylation in cancer
2023 G. Pagani, S. Fornezza, C. Pandini, C. Ferrari, M. Chiara, P. Gandellini
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants
2023 P. Pinoli, A. Canakoglu, S. Ceri, M. Chiara, E. Ferrandi, L. Minotti, A. Bernasconi