CHIARA, MATTEO
CHIARA, MATTEO
Dipartimento di Bioscienze
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
2024 A.M. Mc Cartney, G. Formenti, A. Mouton, D. De Panis, L.S. Marins, H.G. Leitão, G. Diedericks, J. Kirangwa, M. Morselli, J. Salces-Ortiz, N. Escudero, A. Iannucci, C. Natali, H. Svardal, R. Fernández, T. De Pooter, G. Joris, M. Strazisar, J.M.D. Wood, K.E. Herron, O. Seehausen, P.C. Watts, F. Shaw, R.P. Davey, A. Minotto, J.M. Fernández, A. Böhne, C. Alegria, T. Alioto, P.C. Alves, I.R. Amorim, J. Aury, N. Backstrom, P. Baldrian, L. Baltrunaite, E. Barta, B. Bedhom, C. Belser, J. Bergsten, L. Bertrand, H. Bilandija, M. Binzer-Panchal, I. Bista, M. Blaxter, P.A.V. Borges, G.B. Dias, M. Bosse, T. Brown, R. Bruggmann, E. Buena-Atienza, J. Burgin, E. Buzan, A. Cariani, N. Casadei, M. Chiara, S. Chozas, F. Čiampor, A. Crottini, C. Cruaud, F. Cruz, L. Dalen, A. De Biase, J. del Campo, T. Delic, A.B. Dennis, M.F.L. Derks, M.A. Diroma, M. Djan, S. Duprat, K. Eleftheriadi, P.G.D. Feulner, J. Flot, G. Forni, B. Fosso, P. Fournier, C. Fournier-Chambrillon, T. Gabaldon, S. Garg, C. Gissi, L. Giupponi, J. Gomez-Garrido, J. González, M.L. Grilo, B. Grüning, T. Guerin, N. Guiglielmoni, M. Gut, M.P. Haesler, C. Hahn, B. Halpern, P.W. Harrison, J. Heintz, M. Hindrikson, J. Höglund, K. Howe, G.M. Hughes, B. Istace, M.J. Cock, F. Janžekovič, Z.O. Jonsson, S. Joye-Dind, J.J. Koskimäki, B. Krystufek, J. Kubacka, H. Kuhl, S. Kusza, K. Labadie, M. Lähteenaro, H. Lantz, A. Lavrinienko, L. Leclère, R.J. Lopes, O. Madsen, G. Magdelenat, G. Magoga, T. Manousaki, T. Mappes, J.P. Marques, G.I.M. Redondo, F. Maumus, S.A. Mccarthy, H. Megens, J. Melo-Ferreira, S.L. Mendes, M. Montagna, J. Moreno, M. Mosbech, M. Moura, Z. Musilova, E. Myers, W.J. Nash, A. Nater, P. Nicholson, M. Niell, R. Nijland, B. Noel, K. Noren, P.H. Oliveira, R. Olsen, L. Ometto, R.A. Oomen, S. Ossowski, V. Palinauskas, S. Palsson, J.P. Panibe, J. Pauperio, M. Pavlek, E. Payen, J. Pawlowska, J. Pellicer, G. Pesole, J. Pimenta, M. Pippel, A.M. Pirttilä, N. Poulakakis, J. Rajan, R. M. C. Rego, R. Resendes, P. Resl, A. Riesgo, P. Rodin-Morch, A.E.R. Soares, C.R. Fernandes, M.M. Romeiras, G. Roxo, L. Rüber, M.J. Ruiz-Lopez, U. Saarma, L.P. da Silva, M. Sim-Sim, L. Soler, V.C. Sousa, C.S. Santos, A. Spada, M. Stefanovic, V. Steger, J. Stiller, M. Stöck, T.H. Struck, H. Sudasinghe, R. Tapanainen, C. Tellgren-Roth, H. Trindade, Y. Tukalenko, I. Urso, B. Vacherie, S.M. Van Belleghem, K. Van Oers, C. Vargas-Chavez, N. Velickovic, N. Vella, A. Vella, C. Vernesi, S. Vicente, S. Villa, O.V. Pettersson, F.A.M. Volckaert, J. Voros, P. Wincker, S. Winkler, C. Ciofi, R.M. Waterhouse, C.J. Mazzoni
The pancancer overexpressed NFYC Antisense 1 controls cell cycle mitotic progression through in cis and in trans modes of action
2024 C. Pandini, G. Pagani, M. Tassinari, E. Vitale, E. Bezzecchi, M.K. Saadeldin, V. Doldi, G. Giannuzzi, R. Mantovani, M. Chiara, A. Ciarrocchi, P. Gandellini
Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue
2024 S.N. Cox, C. Lo Giudice, A. Lavecchia, M.L. Poeta, M. Chiara, E. Picardi, G. Pesole
Development of a state of the art computational environment for handling human genetic data : the effort of ELIXIR-IT
2024 C. Lo Giudice, F. Licciulli, G. Miniello, M. Moscatelli, S.N. Cox, A.S. Varvara, B. Fosso, M.A. Tangaro, R. Cilli, D. Traversa, G. Donvito, E. Capriotti, M. Chiara, F. Zambelli, G. Pesole
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
Integrating single nuclei and bulk RNA sequencing in rice shoot apical meristems uncovers candidate early floral transition gene networks
2024 D. Traversa, G. Vicentini, P.K. Krukowski, L. Conti, M. Chiara, V. Brambilla
AIEC-dependent pathogenic Th17 cell transdifferentiation in Crohn's disease is suppressed by rfaP and ybaT deletion
2024 G. Leccese, M. Chiara, I. Dusetti, D. Noviello, E. Billard, A. Bibi, G. Conte, C. Consolandi, M. Vecchi, M.P. Conte, N. Barnich, F. Caprioli, F. Facciotti, M. Paroni
Data-driven recombination detection in viral genomes
2024 T. Alfonsi, A. Bernasconi, M. Chiara, S. Ceri
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants
2023 P. Pinoli, A. Canakoglu, S. Ceri, M. Chiara, E. Ferrandi, L. Minotti, A. Bernasconi
The pancancer overexpressed and cell cycle regulated NFYC antisense 1 controls tumor E2F/MYC proliferation programs through in cis and in trans modes of action
2023 C. Pandini, G. Pagani, M. Tassinari, E. Vitale, E. Bezzecchi, V. Doldi, K. Saadeldin, F. Rotundo, M. Chiara, A. Ciarrocchi, P. Gandellini
NFYA alternative cleavage and polyadenylation in cancer
2023 G. Pagani, S. Fornezza, C. Pandini, C. Ferrari, M. Chiara, P. Gandellini
NFYA alternative cleavage and polyadenylation in cancer
2023 G. Pagani, S. Fornezza, C. Pandini, C. Ferrari, M. Chiara, P. Gandellini
An intestinal Th17 subset is associated with inflammation in Crohn's Disease and activated by adherent-invasive Escherichia coli (AIEC)
2023 M. Paroni, G. Leccese, V. Ranzani, G. Moschetti, M. Chiara, F. Perillo, S. Ferri, F. Clemente, D. Noviello, F.S. Conforti, S. Ferrero, B. Karnani, R. Bosotti, C. Vasco, S. Curti, M.C. Crosti, P. Gruarin, G. Rossetti, M.P. Conte, M. Vecchi, M. Pagani, P. Landini, F. Facciotti, S. Abrignani, F. Caprioli, J. Geginat
Whole-Exome and Transcriptome Sequencing Expands the Genotype of Majewski Osteodysplastic Primordial Dwarfism Type II
2023 F. Marzano, M. Chiara, A. Consiglio, G. D'Amato, M. Gentile, V. Mirabelli, M. Piane, C. Savio, M. Fabiani, D. D'Elia, E. Sbisa, G. Scarano, F. Lonardo, A. Tullo, G. Pesole, M.F. Faienza
Effect of diet and genotype on the miRNome of mice with altered lipoprotein metabolism
2023 M. Busnelli, S. Manzini, A. Colombo, E. Franchi, M. Chiara, G. Zaffaroni, D. Horner, G. Chiesa
Rice florigens control a common set of genes at the shoot apical meristem including the F-BOX BROADER TILLER ANGLE 1 that regulates tiller angle and spikelet development
2023 L. Mineri, M. Cerise, F. Giaume, G. Vicentini, D. Martignago, M. Chiara, F. Galbiati, A. Spada, D. Horner, F. Fornara, V. Brambilla
HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2
2023 M. Chiara, D.S. Horner, E. Ferrandi, C. Gissi, G. Pesole