CHIARA, MATTEO
CHIARA, MATTEO
Dipartimento di Bioscienze
De Novo Assembly of the Polyhydroxybutyrate (PHB) Producer Azohydromonas lata Strain H1 Genome and Genomic Analysis of PHB Production Machinery
2025 D. Traversa, C. Pazzani, P. D'Addabbo, L. Trisolini, M. Chiara, M. Oliva, A. Marzella, C. Mandorino, C. Calia, G. Chimienti, C. Manzari, G. Pesole, M. Scrascia
Integrating single nuclei and bulk RNA sequencing in rice shoot apical meristems uncovers candidate early floral transition gene networks
2025 D. Traversa, G. Vicentini, P.K. Krukowski, L. Conti, M. Chiara, V. Brambilla
Development of a state of the art computational environment for handling human genetic data : the effort of ELIXIR-IT
2024 C. Lo Giudice, F. Licciulli, G. Miniello, M. Moscatelli, S.N. Cox, A.S. Varvara, B. Fosso, M.A. Tangaro, R. Cilli, D. Traversa, G. Donvito, E. Capriotti, M. Chiara, F. Zambelli, G. Pesole
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
2024 A.M. Mc Cartney, G. Formenti, A. Mouton, D. De Panis, L.S. Marins, H.G. Leitão, G. Diedericks, J. Kirangwa, M. Morselli, J. Salces-Ortiz, N. Escudero, A. Iannucci, C. Natali, H. Svardal, R. Fernández, T. De Pooter, G. Joris, M. Strazisar, J.M.D. Wood, K.E. Herron, O. Seehausen, P.C. Watts, F. Shaw, R.P. Davey, A. Minotto, J.M. Fernández, A. Böhne, C. Alegria, T. Alioto, P.C. Alves, I.R. Amorim, J. Aury, N. Backstrom, P. Baldrian, L. Baltrunaite, E. Barta, B. Bedhom, C. Belser, J. Bergsten, L. Bertrand, H. Bilandija, M. Binzer-Panchal, I. Bista, M. Blaxter, P.A.V. Borges, G.B. Dias, M. Bosse, T. Brown, R. Bruggmann, E. Buena-Atienza, J. Burgin, E. Buzan, A. Cariani, N. Casadei, M. Chiara, S. Chozas, F. Čiampor, A. Crottini, C. Cruaud, F. Cruz, L. Dalen, A. De Biase, J. del Campo, T. Delic, A.B. Dennis, M.F.L. Derks, M.A. Diroma, M. Djan, S. Duprat, K. Eleftheriadi, P.G.D. Feulner, J. Flot, G. Forni, B. Fosso, P. Fournier, C. Fournier-Chambrillon, T. Gabaldon, S. Garg, C. Gissi, L. Giupponi, J. Gomez-Garrido, J. González, M.L. Grilo, B. Grüning, T. Guerin, N. Guiglielmoni, M. Gut, M.P. Haesler, C. Hahn, B. Halpern, P.W. Harrison, J. Heintz, M. Hindrikson, J. Höglund, K. Howe, G.M. Hughes, B. Istace, M.J. Cock, F. Janžekovič, Z.O. Jonsson, S. Joye-Dind, J.J. Koskimäki, B. Krystufek, J. Kubacka, H. Kuhl, S. Kusza, K. Labadie, M. Lähteenaro, H. Lantz, A. Lavrinienko, L. Leclère, R.J. Lopes, O. Madsen, G. Magdelenat, G. Magoga, T. Manousaki, T. Mappes, J.P. Marques, G.I.M. Redondo, F. Maumus, S.A. Mccarthy, H. Megens, J. Melo-Ferreira, S.L. Mendes, M. Montagna, J. Moreno, M. Mosbech, M. Moura, Z. Musilova, E. Myers, W.J. Nash, A. Nater, P. Nicholson, M. Niell, R. Nijland, B. Noel, K. Noren, P.H. Oliveira, R. Olsen, L. Ometto, R.A. Oomen, S. Ossowski, V. Palinauskas, S. Palsson, J.P. Panibe, J. Pauperio, M. Pavlek, E. Payen, J. Pawlowska, J. Pellicer, G. Pesole, J. Pimenta, M. Pippel, A.M. Pirttilä, N. Poulakakis, J. Rajan, R. M. C. Rego, R. Resendes, P. Resl, A. Riesgo, P. Rodin-Morch, A.E.R. Soares, C.R. Fernandes, M.M. Romeiras, G. Roxo, L. Rüber, M.J. Ruiz-Lopez, U. Saarma, L.P. da Silva, M. Sim-Sim, L. Soler, V.C. Sousa, C.S. Santos, A. Spada, M. Stefanovic, V. Steger, J. Stiller, M. Stöck, T.H. Struck, H. Sudasinghe, R. Tapanainen, C. Tellgren-Roth, H. Trindade, Y. Tukalenko, I. Urso, B. Vacherie, S.M. Van Belleghem, K. Van Oers, C. Vargas-Chavez, N. Velickovic, N. Vella, A. Vella, C. Vernesi, S. Vicente, S. Villa, O.V. Pettersson, F.A.M. Volckaert, J. Voros, P. Wincker, S. Winkler, C. Ciofi, R.M. Waterhouse, C.J. Mazzoni
The pancancer overexpressed NFYC Antisense 1 controls cell cycle mitotic progression through in cis and in trans modes of action
2024 C. Pandini, G. Pagani, M. Tassinari, E. Vitale, E. Bezzecchi, M.K. Saadeldin, V. Doldi, G. Giannuzzi, R. Mantovani, M. Chiara, A. Ciarrocchi, P. Gandellini
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
SCALT: automatic identification of cell types from single-cell RNA sequencing data
2024 D. Traversa, M. Chiara
Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue
2024 S.N. Cox, C. Lo Giudice, A. Lavecchia, M.L. Poeta, M. Chiara, E. Picardi, G. Pesole
Data-driven recombination detection in viral genomes
2024 T. Alfonsi, A. Bernasconi, M. Chiara, S. Ceri
AIEC-dependent pathogenic Th17 cell transdifferentiation in Crohn's disease is suppressed by rfaP and ybaT deletion
2024 G. Leccese, M. Chiara, I. Dusetti, D. Noviello, E. Billard, A. Bibi, G. Conte, C. Consolandi, M. Vecchi, M.P. Conte, N. Barnich, F. Caprioli, F. Facciotti, M. Paroni
Chitinolytic Enzymes of the Hyperparasite Fungus Aphanocladium album: Genome-Wide Survey and Characterization of A Selected Enzyme
2023 C. Leoni, C. Manzari, M. Chiara, P. Veronico, G. Luigi Bruno, G. Pesole, L. Ceci, M. Volpicella
An intestinal Th17 subset is associated with inflammation in Crohn's Disease and activated by adherent-invasive Escherichia coli (AIEC)
2023 M. Paroni, G. Leccese, V. Ranzani, G. Moschetti, M. Chiara, F. Perillo, S. Ferri, F. Clemente, D. Noviello, F.S. Conforti, S. Ferrero, B. Karnani, R. Bosotti, C. Vasco, S. Curti, M.C. Crosti, P. Gruarin, G. Rossetti, M.P. Conte, M. Vecchi, M. Pagani, P. Landini, F. Facciotti, S. Abrignani, F. Caprioli, J. Geginat
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants
2023 P. Pinoli, A. Canakoglu, S. Ceri, M. Chiara, E. Ferrandi, L. Minotti, A. Bernasconi
HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2
2023 M. Chiara, D.S. Horner, E. Ferrandi, C. Gissi, G. Pesole
Rice florigens control a common set of genes at the shoot apical meristem including the F-BOX BROADER TILLER ANGLE 1 that regulates tiller angle and spikelet development
2023 L. Mineri, M. Cerise, F. Giaume, G. Vicentini, D. Martignago, M. Chiara, F. Galbiati, A. Spada, D. Horner, F. Fornara, V. Brambilla
Effect of diet and genotype on the miRNome of mice with altered lipoprotein metabolism
2023 M. Busnelli, S. Manzini, A. Colombo, E. Franchi, M. Chiara, G. Zaffaroni, D. Horner, G. Chiesa
The pancancer overexpressed and cell cycle regulated NFYC antisense 1 controls tumor E2F/MYC proliferation programs through in cis and in trans modes of action
2023 C. Pandini, G. Pagani, M. Tassinari, E. Vitale, E. Bezzecchi, V. Doldi, K. Saadeldin, F. Rotundo, M. Chiara, A. Ciarrocchi, P. Gandellini
NFYA alternative cleavage and polyadenylation in cancer
2023 G. Pagani, S. Fornezza, C. Pandini, C. Ferrari, M. Chiara, P. Gandellini