ZAMBELLI, FEDERICO
ZAMBELLI, FEDERICO
Dipartimento di Bioscienze
CNRBiOmics and ELIXIRxNextGenIT: establishment and enhancement of the Integrative Omics platform of ELIXIR-IT, the Italian Node of the European Research Infrastructure for Life Sciences
2023 E. Sbisà, A. Cestaro, G. Donvito, F. Licciulli, P. Martelli, G. Pavesi, E. Picardi, G. Piccialli, D. Porro, S. Tosatto, A. Tullo, M. Vanoni, A. Via, F. Zambelli, G. Pesole
On demand cloud-based secure environments for analysing personal and health data
2023 F. Zambelli, G. Donvito, M. Tangaro, M. Antonacci, N. Foggetti
Perturbation of protein homeostasis brings plastids at the crossroad between repair and dismantling
2023 L. Tadini, N. Jeran, G. Domingo, F. Zambelli, S. Masiero, A. Calabritto, E. Costantini, S. Forlani, M. Marsoni, F. Briani, C. Vannini, P. Pesaresi
Beyond COVID - how the BY-COVID project is increasing European pandemic preparedness
2023 K. Lauer, R. David, J. Ewbank, N. Van Goethem, E. Harrison, N. Blomberg, E. Bernal-Delgado, P. Quinlan, S. Sansone, A. Lister, P. Rocca-Serra, S. Soiland-Reyes, N. Juty, F. Aarestrup, F. Zambelli, P. Holub, E. Garcia-Alvarez, R. Wittner, M. Panagiotopoulou, M. Antonio Tangaro, P. Gribbon, D. Yu Yuan, G. Pesole, I. Kemmer, S. Capella-Gutierrez, J. Lischke, R. Navest, J. Belien, M.T. Mayrhofer, M. Perola, K. Öjefors Stark, L. Hughes, T. Giles, C. Goble, K. Moilanen, L. Pireddu, S. Leo, C. Martin, R. Andrade Buono, V. Kalaitzi, S. Saldner, J. Carazo, C. Oscar Sorzano, A. Mathur, J. Rambla, A. Jené, B. Singh, A. Navarro, M. Ostaszewski, F. Messina, M. Lavitrano, C. Elvezia Cocuzza, P. Romano, O. Colman, P. Gormannns, H. Hermjakob
SOX2 and NR2F1 coordinate the gene expression program of the early postnatal visual thalamus
2023 L. Serra, A. Nordin, M. Jonasson, C. Marenco, F. Gullo, S. Ottolenghi, F. Zambelli, M. Studer, G. Pavesi, C. Cantù, S.K. Nicolis, S. Mercurio
The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science
2023 M. Antonio Tangaro, M. Antonacci, P. Mandreoli, D. Colombo, N. Foggetti, G. Donvito, G. Pesole, F. Zambelli
Exploring reference data through existing computing services for the bioinformatics community
2022 Y. Sanaa, M. Belhaj Salem, G. Mathieu, C. Blanchet, P. Mandreoli, M. Tangaro, G. Donvito, N. Foggetti, M. Antonacci, L. Burlot, J. Lorenzo, D. Colombo, F. Zambelli, D. Salgado, C. Béroud
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic {mRNAs} untranslated regions
2022 C. Lo Giudice, F. Zambelli, M. Chiara, G. Pavesi, M. Antonio Tangaro, E. Picardi, G. Pesole
Using "Galaxy-rCASC": A Public Galaxy Instance for Single-Cell RNA-Seq Data Analysis
2022 P. Mandreoli, L. Alessandri, R.A. Calogero, M.A. Tangaro, F. Zambelli
Hmga2 protein loss alters nuclear envelope and 3D chromatin structure
2022 G. Divisato, A.M. Chiariello, A. Esposito, P. Zoppoli, F. Zambelli, M.A. Elia, G. Pesole, D. Incarnato, F. Passaro, S. Piscitelli, S. Oliviero, M. Nicodemi, S. Parisi, T. Russo
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
2022 E. Afgan, A. Nekrutenko, B.A. Grüning, D. Blankenberg, J. Goecks, M.C. Schatz, A.E. Ostrovsky, A. Mahmoud, A.J. Lonie, A. Syme, A. Fouilloux, A. Bretaudeau, A. Nekrutenko, A. Kumar, A.C. Eschenlauer, A.D. Desanto, A. Guerler, B. Serrano-Solano, B. Batut, B.A. Grüning, B.W. Langhorst, B. Carr, B.A. Raubenolt, C.J. Hyde, C.J. Bromhead, C.B. Barnett, C. Royaux, C. Gallardo, D. Blankenberg, D.J. Fornika, D. Baker, D. Bouvier, D. Clements, D.A. de Lima Morais, D.L. Tabernero, D. Lariviere, E. Nasr, E. Afgan, F. Zambelli, F. Heyl, F. Psomopoulos, F. Coppens, G.R. Price, G. Cuccuru, G.L. Corguillé, G. Von Kuster, G.G. Akbulut, H. Rasche, H. Hans-Rudolf, I. Eguinoa, I. Makunin, I.J. Ranawaka, J.P. Taylor, J. Joshi, J. Hillman-Jackson, J. Goecks, J.M. Chilton, K. Kamali, K. Suderman, K. Poterlowicz, L.B. Yvan, L. Lopez-Delisle, L. Sargent, M.E. Bassetti, M.A. Tangaro, M. van den Beek, M. Čech, M. Bernt, M. Fahrner, M. Tekman, M.C. Föll, M.C. Schatz, M.R. Crusoe, M. Roncoroni, N. Kucher, N. Coraor, N. Stoler, N. Rhodes, N. Soranzo, N. Pinter, N.A. Goonasekera, P.A. Moreno, P. Videm, P. Melanie, P. Mandreoli, P.D. Jagtap, Q. Gu, R.J.M. Weber, R. Lazarus, R.H.P. Vorderman, S. Hiltemann, S. Golitsynskiy, S. Garg, S.A. Bray, S.L. Gladman, S. Leo, S.P. Mehta, T.J. Griffin, V. Jalili, V. Yves, V. Wen, V.K. Nagampalli, W.A. Bacon, W. de Koning, W. Maier, P.J. Briggs
Laniakea – Update 2021
2021 M. Tangaro, G. Donvito, M. Antonacci, M. Chiara, P. Mandreoli, G. Pesole, F. Zambelli
CorGAT and CorGAT-tracker : Functional annotation of SARS-CoV-2 genomes and tracking mutations and variants of concern
2021 E. Ferrandi, M. Chiara, F. Zambelli, M. Tangaro, P. Mandreoli, D. Horner, G. Pesole
Ascan: a novel method for the study of allele specific expression in single individuals
2021 F. Zambelli, M. Chiara, E. Ferrandi, P. Mandreoli, M. Antonio Tangaro, G. Pavesi, G. Pesole
Using RNentropy to Detect Significant Variation in Gene Expression Across Multiple RNA-Seq or Single-Cell RNA-Seq Samples
2021 F. Zambelli, G. Pavesi
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service
2021 M. Antonio Tangaro, P. Mandreoli, M. Chiara, G. Donvito, M. Antonacci, A. Parisi, A. Bianco, A. Romano, D. Manila Bianchi, D. Cangelosi, P. Uva, I. Molineris, V. Nosi, R.A. Calogero, L. Alessandri, E. Pedrini, M. Mordenti, E. Bonetti, L. Sangiorgi, G. Pesole, F. Zambelli
DOME: recommendations for supervised machine learning validation in biology
2021 I. Walsh, D. Fishman, D. Garcia-Gasulla, T. Titma, G. Pollastri, E. Capriotti, R. Casadio, S. Capella-Gutierrez, D. Cirillo, A. Del Conte, A.C. Dimopoulos, V.D. Del Angel, J. Dopazo, P. Fariselli, J.M. Fernandez, F. Huber, A. Kreshuk, T. Lenaerts, P.L. Martelli, A. Navarro, P.O. Broin, J. Pinero, D. Piovesan, M. Reczko, F. Ronzano, V. Satagopam, C. Savojardo, V. Spiwok, M.A. Tangaro, G. Tartari, D. Salgado, A. Valencia, F. Zambelli, J. Harrow, F.E. Psomopoulos, S.C.E. Tosatto
CorGAT : a tool for the functional annotation of SARS-CoV-2 genomes
2020 M. Chiara, F. Zambelli, M.A. Tangaro, P. Mandreoli, D.S. Horner, G. Pesole
VINYL : Variant prIoritizatioN bY survivaL analysis
2020 P. Mandreoli, M.A. Tangaro, D.S. Horner, F. Zambelli, G. Pesole, M. Chiara
VINYL: Variant prIoritizatioN bY survivaL analysis
2020 M. Chiara, P. Mandreoli, M.A. Tangaro, A.M. D’Erchia, S. Sorrentino, C. Forleo, D.S. Horner, F. Zambelli, G. Pesole