ZAMBELLI, FEDERICO
ZAMBELLI, FEDERICO
Dipartimento di Bioscienze
DEFINING THE ROLE OF DNA POLYMERASE η IN TOLERATING REPLICATION STRESS
2026 L. Grasso, E. Galati, G.M. Nava, L. Atzeni, R. Quadri, G.W. Brown, F. Zambelli, M. Muzi-Falconi, F. Lazzaro
Federated, governed, and interoperable? The emerging architecture of public human genomic data infrastructures: a European perspective
2026 M.A. Tangaro, M. Chiara, G. Pesole, F. Zambelli
Scaling Scientific Workflows in Europe: Architecture and Deployment of the Galaxy-Pulsar Computational Network
2025 M. Antonio Tangaro, S. Nicotri, B. Grüning, S. Kumar Srikakulam, A. Dadras, O. Kaiser, M. Kuntz, A. Bretaudeau, P. De Geest, S. Luna-Valero, M. Chavero Díez, J. María Fernández González, S. Capella-Gutierrez, J. Lluís Gelpí, J. Astalos, B. Jurič, M. Ruda, Ł. Opioła, H. Bayındır, S. Gioiosa, G. De Sanctis, F. Zambelli
SOX2 and NR2F1 coordinate the gene expression program of the early postnatal visual thalamus
2025 L. Serra, A. Nordin, M. Jonasson, C. Marenco, G. Rovelli, A. Diebels, F. Gullo, S. Ottolenghi, F. Zambelli, M. Studer, G. Pavesi, C. Cantù, S.K. Nicolis, S. Mercurio
A histone-centric multi-omics study shows that increased H3K4 methylation sustains triple-negative breast cancer phenotypes
2025 R. Noberini, G. Robusti, A. Vai, E.O. Savoia, M.G. Jodice, G. Bertalot, B. Cat, I. Pallavicini, G. Bonizzi, M. Capra, C.A. Sangalli, F. Zambelli, N. Fusco, S. Pece, G. Pavesi, S. Minucci, T. Bonaldi
Endo-bind-n-seq: identifying RNA motifs of RNA binding proteins isolated from endogenous sources
2025 T.N. Hanelt, N. Treiber, T. Treiber, G. Lehmann, N. Eichner, T. Rothmeier, G. Schmid, R. Reichelt, F. Zambelli, G. Pavesi, D. Grohmann, G. Meister
Pathological PNPase variants with altered RNA binding and degradation activity affect the phenotype of bacterial and human cell models
2025 R. Pizzoccheri, F. Falchi, A. Alloni, M. Caldarulo, T. Camboni, F. Zambelli, G. Pavesi, C. Visentin, C. Camilloni, S. Sertic, F. Briani
DOME Registry: Implementing community-wide recommendations for reporting supervised machine learning in biology
2024 O. Abdelghani Attafi, D. Clementel, K. Kyritsis, E. Capriotti, G. Farrell, S. Fragkouli, L. Jael Castro, A. Hatos, T. Lenaerts, S. Mazurenko, S. Mozaffari, F. Pradelli, P. Ruch, C. Savojardo, P. Turina, F. Zambelli, D. Piovesan, A. Miguel Monzon, F. Psomopoulos, S.C.E. Tosatto
The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update
2024 L.A.L. Abueg, E. Afgan, O. Allart, A.H. Awan, W.A. Bacon, D. Baker, M. Bassetti, B. Batut, M. Bernt, D. Blankenberg, A. Bombarely, A. Bretaudeau, C.J. Bromhead, M.L. Burke, P.K. Capon, M. Čech, M. Chavero-Díez, J.M. Chilton, T.J. Collins, F. Coppens, N. Coraor, G. Cuccuru, F. Cumbo, J. Davis, P.F. De Geest, W. De Koning, M. Demko, A. Desanto, J.M.D. Begines, M.A. Doyle, B. Droesbeke, A. Erxleben-Eggenhofer, M.C. Föll, G. Formenti, A. Fouilloux, R. Gangazhe, T. Genthon, J. Goecks, A.N.G. Beltran, N.A. Goonasekera, N. Goué, T.J. Griffin, B.A. Grüning, A. Guerler, S. Gundersen, O.J.R. Gustafsson, C. Hall, T.W. Harrop, H. Hecht, A. Heidari, T. Heisner, F. Heyl, S. Hiltemann, H. Hotz, C.J. Hyde, P.D. Jagtap, J. Jakiela, J.E. Johnson, J. Joshi, M. Jossé, K. Jum'Ah, M. Kalaš, K. Kamieniecka, T. Kayikcioglu, M. Konkol, L. Kostrykin, N. Kucher, A. Kumar, M. Kuntz, D. Lariviere, R. Lazarus, Y.L. Bras, G.L. Corguillé, J. Lee, S. Leo, L. Liborio, R. Libouban, D.L. Tabernero, L. Lopez-Delisle, L.S. Los, A. Mahmoud, I. Makunin, P. Marin, S. Mehta, W. Mok, P.A. Moreno, F. Morier-Genoud, S. Mosher, T. Müller, E. Nasr, A. Nekrutenko, T.M. Nelson, A.J. Oba, A. Ostrovsky, P.V. Polunina, K. Poterlowicz, E.J. Price, G.R. Price, H. Rasche, B. Raubenolt, C. Royaux, L. Sargent, M.T. Savage, V. Savchenko, D. Savchenko, M.C. Schatz, P. Seguineau, B. Serrano-Solano, N. Soranzo, S.K. Srikakulam, K. Suderman, A.E. Syme, M.A. Tangaro, J.A. Tedds, M. Tekman, W. Cheng (Mike) Thang, A.S. Thanki, M. Uhl, M. Van Den Beek, D. Varshney, J. Vessio, P. Videm, G. Von Kuster, G.R. Watson, N. Whitaker-Allen, U. Winter, M. Wolstencroft, F. Zambelli, P. Zierep, R. Zoabi
Development of a state of the art computational environment for handling human genetic data : the effort of ELIXIR-IT
2024 C. Lo Giudice, F. Licciulli, G. Miniello, M. Moscatelli, S.N. Cox, A.S. Varvara, B. Fosso, M.A. Tangaro, R. Cilli, D. Traversa, G. Donvito, E. Capriotti, M. Chiara, F. Zambelli, G. Pesole
DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology
2024 O.A. Attafi, D. Clementel, K. Kyritsis, E. Capriotti, G. Farrell, S. Fragkouli, L.J. Castro, A. Hatos, T. Lenaerts, S. Mazurenko, S. Mozaffari, F. Pradelli, P. Ruch, C. Savojardo, P. Turina, F. Zambelli, D. Piovesan, A.M. Monzon, F. Psomopoulos, S.C.E. Tosatto
Dynamic configuration and data security for bioinformatics cloud services with the Laniakea Dashboard
2024 M.A. Tangaro, M. Antonacci, G. Donvito, N. Foggetti, P. Mandreoli, D. Colombo, G. Pesole, F. Zambelli
CNRBiOmics and ELIXIRxNextGenIT: establishment and enhancement of the Integrative Omics platform of ELIXIR-IT, the Italian Node of the European Research Infrastructure for Life Sciences
2023 E. Sbisà, A. Cestaro, G. Donvito, F. Licciulli, P. Martelli, G. Pavesi, E. Picardi, G. Piccialli, D. Porro, S. Tosatto, A. Tullo, M. Vanoni, A. Via, F. Zambelli, G. Pesole
On demand cloud-based secure environments for analysing personal and health data
2023 F. Zambelli, G. Donvito, M. Tangaro, M. Antonacci, N. Foggetti
SOX2 and NR2F1 coordinate the gene expression program of the early postnatal visual thalamus
2023 L. Serra, A. Nordin, M. Jonasson, C. Marenco, F. Gullo, S. Ottolenghi, F. Zambelli, M. Studer, G. Pavesi, C. Cantù, S.K. Nicolis, S. Mercurio
The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science
2023 M. Antonio Tangaro, M. Antonacci, P. Mandreoli, D. Colombo, N. Foggetti, G. Donvito, G. Pesole, F. Zambelli
Perturbation of protein homeostasis brings plastids at the crossroad between repair and dismantling
2023 L. Tadini, N. Jeran, G. Domingo, F. Zambelli, S. Masiero, A. Calabritto, E. Costantini, S. Forlani, M. Marsoni, F. Briani, C. Vannini, P. Pesaresi
Beyond COVID - how the BY-COVID project is increasing European pandemic preparedness
2023 K. Lauer, R. David, J. Ewbank, N. Van Goethem, E. Harrison, N. Blomberg, E. Bernal-Delgado, P. Quinlan, S. Sansone, A. Lister, P. Rocca-Serra, S. Soiland-Reyes, N. Juty, F. Aarestrup, F. Zambelli, P. Holub, E. Garcia-Alvarez, R. Wittner, M. Panagiotopoulou, M. Antonio Tangaro, P. Gribbon, D. Yu Yuan, G. Pesole, I. Kemmer, S. Capella-Gutierrez, J. Lischke, R. Navest, J. Belien, M.T. Mayrhofer, M. Perola, K. Öjefors Stark, L. Hughes, T. Giles, C. Goble, K. Moilanen, L. Pireddu, S. Leo, C. Martin, R. Andrade Buono, V. Kalaitzi, S. Saldner, J. Carazo, C. Oscar Sorzano, A. Mathur, J. Rambla, A. Jené, B. Singh, A. Navarro, M. Ostaszewski, F. Messina, M. Lavitrano, C. Elvezia Cocuzza, P. Romano, O. Colman, P. Gormannns, H. Hermjakob
Using "Galaxy-rCASC": A Public Galaxy Instance for Single-Cell RNA-Seq Data Analysis
2022 P. Mandreoli, L. Alessandri, R.A. Calogero, M.A. Tangaro, F. Zambelli
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
2022 E. Afgan, A. Nekrutenko, B.A. Grüning, D. Blankenberg, J. Goecks, M.C. Schatz, A.E. Ostrovsky, A. Mahmoud, A.J. Lonie, A. Syme, A. Fouilloux, A. Bretaudeau, A. Nekrutenko, A. Kumar, A.C. Eschenlauer, A.D. Desanto, A. Guerler, B. Serrano-Solano, B. Batut, B.A. Grüning, B.W. Langhorst, B. Carr, B.A. Raubenolt, C.J. Hyde, C.J. Bromhead, C.B. Barnett, C. Royaux, C. Gallardo, D. Blankenberg, D.J. Fornika, D. Baker, D. Bouvier, D. Clements, D.A. de Lima Morais, D.L. Tabernero, D. Lariviere, E. Nasr, E. Afgan, F. Zambelli, F. Heyl, F. Psomopoulos, F. Coppens, G.R. Price, G. Cuccuru, G.L. Corguillé, G. Von Kuster, G.G. Akbulut, H. Rasche, H. Hans-Rudolf, I. Eguinoa, I. Makunin, I.J. Ranawaka, J.P. Taylor, J. Joshi, J. Hillman-Jackson, J. Goecks, J.M. Chilton, K. Kamali, K. Suderman, K. Poterlowicz, L.B. Yvan, L. Lopez-Delisle, L. Sargent, M.E. Bassetti, M.A. Tangaro, M. van den Beek, M. Čech, M. Bernt, M. Fahrner, M. Tekman, M.C. Föll, M.C. Schatz, M.R. Crusoe, M. Roncoroni, N. Kucher, N. Coraor, N. Stoler, N. Rhodes, N. Soranzo, N. Pinter, N.A. Goonasekera, P.A. Moreno, P. Videm, P. Melanie, P. Mandreoli, P.D. Jagtap, Q. Gu, R.J.M. Weber, R. Lazarus, R.H.P. Vorderman, S. Hiltemann, S. Golitsynskiy, S. Garg, S.A. Bray, S.L. Gladman, S. Leo, S.P. Mehta, T.J. Griffin, V. Jalili, V. Yves, V. Wen, V.K. Nagampalli, W.A. Bacon, W. de Koning, W. Maier, P.J. Briggs