ZAMBELLI, FEDERICO
ZAMBELLI, FEDERICO
Dipartimento di Bioscienze
A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq Data
2012 F. Zambelli, G. Pavesi
A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors
2016 D. Dolfini, F. Zambelli, M. Pedrazzoli, R. Mantovani, G. Pavesi
A perspective of promoter architecture from the CCAAT box
2009 D. Dolfini, F. Zambelli, G. Pavesi, R. Mantovani
A web-based service for ChIP-Seq data analysis
2010 P. D'Onorio De Meo, M. D'Antonio, T. Castrignanò, F. Zambelli, G. Pavesi, G. Pesole
Algorithmic Issues in the Analysis of Chip-Seq Data
2010 F. Zambelli, G. Pavesi
An acetylation-mono-ubiquitination switch on lysine 120 of H2B
2011 R. Gatta, D. Dolfini, F. Zambelli, C. Imbriano, G. Pavesi, R. Mantovani
Ascan: a novel method for the study of allele specific expression in single individuals
2021 F. Zambelli, M. Chiara, E. Ferrandi, P. Mandreoli, M. Antonio Tangaro, G. Pavesi, G. Pesole
ASPicDB : a database of annotated transcript and protein variants generated by alternative splicing
2011 P.L. Martelli, M. D’Antonio, P. Bonizzoni, T. Castrignanò, A.M. D’Erchia, P. D’Onorio De Meo, P. Fariselli, M. Finelli, F. Licciulli, M. Mangiulli, F. Mignone, G. Pavesi, E. Picardi, R. Rizzi, I. Rossi, A. Valletti, A. Zauli, F. Zambelli, R. Casadio, G. Pesole
Assessment of orthologous splicing isoforms in human and mouse orthologous genes
2010 F. Zambelli, G. Pavesi, C. Gissi, D.S. Horner, G. Pesole
Bioinformatic approaches to the identification of regulatory elements in genomic sequences
2009 F. Zambelli
CNRBiOmics and ELIXIRxNextGenIT: establishment and enhancement of the Integrative Omics platform of ELIXIR-IT, the Italian Node of the European Research Infrastructure for Life Sciences
2023 E. Sbisà, A. Cestaro, G. Donvito, F. Licciulli, P. Martelli, G. Pavesi, E. Picardi, G. Piccialli, D. Porro, S. Tosatto, A. Tullo, M. Vanoni, A. Via, F. Zambelli, G. Pesole
Computational Tools for the Discovery of Regulatory Elements in Nucleotide Sequences from Co-Regulated or Homologous Genes
2006 G. Pavesi, F. Zambelli, G. Mauri, G. Pesole
CorGAT : a tool for the functional annotation of SARS-CoV-2 genomes
2020 M. Chiara, F. Zambelli, M.A. Tangaro, P. Mandreoli, D.S. Horner, G. Pesole
CorGAT and CorGAT-tracker : Functional annotation of SARS-CoV-2 genomes and tracking mutations and variants of concern
2021 E. Ferrandi, M. Chiara, F. Zambelli, M. Tangaro, P. Mandreoli, D. Horner, G. Pesole
CoVaCS : a consensus variant calling system
2018 M. Chiara, S. Gioiosa, G. Chillemi, M. D'Antonio, T. Flati, E. Picardi, F. Zambelli, D.S. Horner, G. Pesole, T. Castrignanò
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data
2019 M. Chiara, F. Zambelli, E. Picardi, D.S. Horner, G. Pesole
Cscan : finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets
2012 F. Zambelli, G.M. Prazzoli, G. Pesole, G. Pavesi
CSCAN: FINDING COMMON REGULATORS IN A SET OF GENES USING GENOME-WIDE CHIP-SEQ DATA
2011 F. Zambelli, G. Pavesi
De novo secondary structure motif discovery using RNAProfile
2015 F. Zambelli, G. Pavesi
DOME: recommendations for supervised machine learning validation in biology
2021 I. Walsh, D. Fishman, D. Garcia-Gasulla, T. Titma, G. Pollastri, E. Capriotti, R. Casadio, S. Capella-Gutierrez, D. Cirillo, A. Del Conte, A.C. Dimopoulos, V.D. Del Angel, J. Dopazo, P. Fariselli, J.M. Fernandez, F. Huber, A. Kreshuk, T. Lenaerts, P.L. Martelli, A. Navarro, P.O. Broin, J. Pinero, D. Piovesan, M. Reczko, F. Ronzano, V. Satagopam, C. Savojardo, V. Spiwok, M.A. Tangaro, G. Tartari, D. Salgado, A. Valencia, F. Zambelli, J. Harrow, F.E. Psomopoulos, S.C.E. Tosatto