SOTO GOMEZ, MAURICIO ABEL
SOTO GOMEZ, MAURICIO ABEL
Dipartimento di Informatica Giovanni Degli Antoni
Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines
2025 A. Juyal, Z. Tayebi, A. Zelikovsky, M. Soto-Gomez, S. Ciccolella, G.D. Vedova, M. Patterson
Intrinsic-dimension analysis for guiding dimensionality reduction and data fusion in multi-omics data processing
2025 J. Gliozzo, M. Soto-Gomez, V. Guarino, A. Bonometti, A. Cabri, E. Cavalleri, J. Reese, P.N. Robinson, M. Mesiti, G. Valentini, E. Casiraghi
RNA knowledge-graph analysis through homogeneous embedding methods
2025 F. Torgano, M. Soto Gomez, M. Zignani, J. Gliozzo, E. Cavalleri, M. Mesiti, E. Casiraghi, G. Valentini
miss-SNF: a multimodal patient similarity network integration approach to handle completely missing data sources
2025 J. Gliozzo, M.A. Soto Gomez, A. Bonometti, A. Patak, E. Casiraghi, G. Valentini
Replacing non-biomedical concepts improves embedding of biomedical concepts
2025 E. Niyonkuru, M.S. Gomez, E. Casarighi, S. Antogiovanni, H. Blau, J.T. Reese, G. Valentini, P.N. Robinson
On recognizing graphs representing persistent perfect phylogenies
2025 P. Bonizzoni, G. Della Vedova, M. Soto Gomez, G. Trucco
Leveraging generative AI to assist biocuration of medical actions for rare disease
2025 E. Niyonkuru, J.H. Caufield, L.C. Carmody, M.A. Gargano, S. Toro, P.L. Whetzel, H. Blau, M. Soto Gomez, E. Casiraghi, L. Chimirri, J.T. Reese, G. Valentini, M.A. Haendel, C.J. Mungall, P.N. Robinson
SPIREX: Improving LLM-based relation extraction from RNA-focused scientific literature using graph machine learning
2024 E. Cavalleri, M. Soto Gomez, A. Pashaeibarough, D. Malchiodi, J.H. Caufield, J.T. Reese, C. Mungall, P.N. Robinson, E. Casiraghi, G. Valentini, M. Mesiti
An ontology-based knowledge graph for representing interactions involving RNA molecules
2024 E. Cavalleri, A. Cabri, M. Soto-Gomez, S. Bonfitto, P. Perlasca, J. Gliozzo, T.J. Callahan, J. Reese, P.N. Robinson, E. Casiraghi, G. Valentini, M. Mesiti
Initial achievements in relation extraction from RNA-focused scientific papers
2024 E. Cavalleri, M. Soto-Gomez, A. Pashaeibarough, D. Malchiodi, H. Caufield, J. Reese, C.J. Mungall, P.N. Robinson, E. Casiraghi, G. Valentini, M. Mesiti
Shaping the causes of product returns: topic modeling on online customer reviews
2024 A. Mor, C. Orsenigo, M. Soto Gomez, C. Vercellis
Towards the Construction of an RNA-based Knowledge Graph
2023 E. Cavalleri, S. Bonfitto, A. Cabri, J. Gliozzo, P. Perlasca, M. Soto-Gomez, G. Trucco, E. Casiraghi, G. Valentini, M. Mesiti
The promises of large language models for protein design and modeling
2023 G. Valentini, D. Malchiodi, J. Gliozzo, M. Mesiti, M. Soto Gomez, A. Cabri, J. Reese, E. Casiraghi, P.N. Robinson
RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules
2023 E. Cavalleri, A. Cabri, M. Soto-Gomez, S. Bonfitto, P. Perlasca, J. Gliozzo, T.J. Callahan, J. Reese, P. N Robinson, E. Casiraghi, G. Valentini, M. Mesiti
A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph
2023 E. Cavalleri, S. Bonfitto, A. Cabri, J. Gliozzo, P. Perlasca, M. Soto-Gomez, G. Trucco, E. Casiraghi, G. Valentini, M. Mesiti
Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison
2023 S. Ciccolella, G. Della Vedova, V. Filipović, M. Soto Gomez
Multimodal sentiment and emotion recognition in hyperbolic space
2021 K. Arano, C. Orsenigo, M. Soto Gomez, C. Vercellis
Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses
2021 S. Ciccolella, C. Ricketts, M. Soto Gomez, M. Patterson, D. Silverbush, P. Bonizzoni, I. Hajirasouliha, G. Della Vedova
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
2020 S. Ciccolella, M. Soto Gomez, M.D. Patterson, G. Della Vedova, I. Hajirasouliha, P. Bonizzoni
Does relaxing the infinite sites assumption give better tumor phylogenies? An ILP-based comparative approach
2019 P. Bonizzoni, S. Ciccolella, G.D. Vedova, M. Soto