Sfoglia per Autore
Yet another bioinformatic pipeline for the analysis of ChIP-Seq Data
2010 G. Prazzoli, F. Zambelli, G. Pavesi
An acetylation-mono-ubiquitination switch on lysine 120 of H2B
2011 R. Gatta, D. Dolfini, F. Zambelli, C. Imbriano, G. Pavesi, R. Mantovani
ASPicDB : a database of annotated transcript and protein variants generated by alternative splicing
2011 P.L. Martelli, M. D’Antonio, P. Bonizzoni, T. Castrignanò, A.M. D’Erchia, P. D’Onorio De Meo, P. Fariselli, M. Finelli, F. Licciulli, M. Mangiulli, F. Mignone, G. Pavesi, E. Picardi, R. Rizzi, I. Rossi, A. Valletti, A. Zauli, F. Zambelli, R. Casadio, G. Pesole
Genome-wide analysis of p63 and mutant p53 in human keratinocytes.
2011 E. Martynova, S. Pozzi, D. Dolfini, F. Zambelli, G. Pavesi, R. Mantovani
CSCAN: FINDING COMMON REGULATORS IN A SET OF GENES USING GENOME-WIDE CHIP-SEQ DATA
2011 F. Zambelli, G. Pavesi
Cscan : finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets
2012 F. Zambelli, G.M. Prazzoli, G. Pesole, G. Pavesi
Gain-of-function p53 mutants have widespread genomic locations partially overlapping with p63
2012 E. Martynova, S. Pozzi, V. Basile, D. Dolfini, F. Zambelli, C. Imbriano, G. Pavesi, R. Mantovani
A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq Data
2012 F. Zambelli, G. Pavesi
Widespread generation of alternative UTRs contributes to sex-specific RNA binding by UNR
2012 M. Mihailovich, L. Wurth, F. Zambelli, I. Abaza, C. Militti, F.M. Mancuso, G. Roma, G. Pavesi, F. Gebauer
SpliceAid-F : a database of human splicing factors and their RNA-binding sites
2013 M. Giulietti, F. Piva, M. D'Antonio, P. D'Onorio De Meo, D. Paoletti, T. Castrignanò, A. M. D'Erchia, E. Picardi, F. Zambelli, G. Principato, G. Pavesi, G. Pesole
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
2013 F. Zambelli, G. Pesole, G. Pavesi
Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis
2013 V. Gregis, F. Andrés, A. Sessa, R. Guerra, S. Simonini, J.L. Mateos, S. Torti, F. Zambelli, G.M. Prazzoli, K.N. Bjerkan, P.E. Grini, G. Pavesi, L. Colombo, G. Coupland, M.M. Kater
PscanChIP : finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments
2013 F. Zambelli, G. Pesole, G. Pavesi
Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences
2014 F. Zambelli, G. Pesole, G. Pavesi
De novo secondary structure motif discovery using RNAProfile
2015 F. Zambelli, G. Pavesi
RIP-Seq data analysis to determine RNA-protein associations
2015 F. Zambelli, G. Pavesi
MiR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth
2015 M. Mihailovich, M. Bremang, V. Spadotto, D. Musiani, E. Vitale, G. Varano, F. Zambelli, F.M. Mancuso, D.A. Cairns, G. Pavesi, S. Casola, T. Bonaldi
Resetting cancer stem cell regulatory nodes upon MYC inhibition
2016 S. Galardi, M. Savino, F. Scagnoli, S. Pellegatta, F. Pisati, F. Zambelli, B. Illi, D. Annibali, S. Beji, E. Orecchini, M.A. Alberelli, C. Apicella, R.A. Fontanella, A. Michienzi, G. Finocchiaro, M.G. Farace, G. Pavesi, S.A. Ciafrè, S. Nasi
Tools and data services registry: a community effort to document bioinformatics resources
2016 J. Ison, K. Rapacki, H. Ménager, M. Kalaš, E. Rydza, P. Chmura, C. Anthon, N. Beard, K. Berka, D. Bolser, T. Booth, A. Bretaudeau, J. Brezovsky, R. Casadio, G. Cesareni, F. Coppens, M. Cornell, G. Cuccuru, K. Davidsen, G. Della Vedova, T. Dogan, O. Doppelt-Azeroual, L. Emery, E. Gasteiger, T. Gatter, T. Goldberg, M. Grosjean, B. Gruüing, M. Helmer-Citterich, H. Ienasescu, V. Ioannidis, M.C. Jespersen, R. Jimenez, N. Juty, P. Juvan, M. Koch, C. Laibe, J. Li, L. Licata, F. Mareuil, I. Mičetić, R.M. Friborg, S. Moretti, C. Morris, S. Möller, A. Nenadic, H. Peterson, G. Profiti, P. Rice, P. Romano, P. Roncaglia, R. Saidi, A. Schafferhans, V. Schwämmle, C. Smith, M.M. Sperotto, H. Stockinger, R.S. Varěková, S.C.E. Tosatto, V. De La Torre, P. Uva, A. Via, G. Yachdav, F. Zambelli, G. Vriend, B. Rost, H. Parkinson, P. Løngreen, S. Brunak
A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors
2016 D. Dolfini, F. Zambelli, M. Pedrazzoli, R. Mantovani, G. Pavesi
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