Integrating rCASC in Laniakea: rCASC, Cluster Analysis of Single Cells [Alessandri et al. BioRxiv], is part of the reproducible-bioinformatics.org project and provides single cell analysis functionalities within the reproducible rules described by Sandve et al. [PLoS Comp Biol. 2013]. Laniakea [Tangaro et al. BioRxiv Bioinformatics] provides the possibility to automate the creation of Galaxy-based virtualized environments through an easy setup procedure, providing an on-demand workspace ready to be used by life scientists and bioinformaticians. The final goal is to offer rCASC as a Galaxy flavor in the Laniakea Galaxy on-demand environment.
rCASC implementation in Laniakea: porting containerization-based-reproducibility to a cloud Galaxy on-demand platform / L. Alessandri, P. Mandreoli, M.A. Tangaro, M. Beccuti, R.A. Calogero, F. Zambelli. ((Intervento presentato al convegno ELIXIR - EXCELERATE All Hands meeting 2019 tenutosi a Lisbona nel 2019.
rCASC implementation in Laniakea: porting containerization-based-reproducibility to a cloud Galaxy on-demand platform
P. Mandreoli;F. Zambelli
2019
Abstract
Integrating rCASC in Laniakea: rCASC, Cluster Analysis of Single Cells [Alessandri et al. BioRxiv], is part of the reproducible-bioinformatics.org project and provides single cell analysis functionalities within the reproducible rules described by Sandve et al. [PLoS Comp Biol. 2013]. Laniakea [Tangaro et al. BioRxiv Bioinformatics] provides the possibility to automate the creation of Galaxy-based virtualized environments through an easy setup procedure, providing an on-demand workspace ready to be used by life scientists and bioinformaticians. The final goal is to offer rCASC as a Galaxy flavor in the Laniakea Galaxy on-demand environment.
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