Lake sedimentary dna research on past terrestrial and aquatic biodiversity : Overview and recommendations

Capo, E.; Giguet-Covex, C.; Rouillard, A.; Nota, K.; Heintzman, P.D.; Vuillemin, A.; Ariztegui, D.; Arnaud, F.; Belle, S.; Bertilsson, S.; Bigler, C.; Bindler, R.; Brown, A.G.; Clarke, C.L.; Crump, S.E.; Debroas, D.; Englund, G.; Ficetola, G.F.; Garner, R.E.; Gauthier, J.; Gregory-Eaves, I.; Heinecke, L.; Herzschuh, U.; Ibrahim, A.; Kisand, V.; Kjaer, K.H.; Lammers, Y.; Littlefair, J.; Messager, E.; Monchamp, M.-.; Olajos, F.; Orsi, W.; Pedersen, M.W.; Rijal, D.P.; Rydberg, J.; Spanbauer, T.; Stoof-Leichsenring, K.R.; Taberlet, P.; Talas, L.; Thomas, C.; Walsh, D.A.; Wang, Y.; Willerslev, E.; van Woerkom, A.; Zimmermann, H.H.; Coolen, M.J.L.; Epp, L.S.; Domaizon, I.; Alsos, I.G.; Parducci, L.

doi:10.3390/quat4010006

The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.

Lake sedimentary dna research on past terrestrial and aquatic biodiversity : Overview and recommendations / E. Capo, C. Giguet-Covex, A. Rouillard, K. Nota, P.D. Heintzman, A. Vuillemin, D. Ariztegui, F. Arnaud, S. Belle, S. Bertilsson, C. Bigler, R. Bindler, A.G. Brown, C.L. Clarke, S.E. Crump, D. Debroas, G. Englund, G.F. Ficetola, R.E. Garner, J. Gauthier, I. Gregory-Eaves, L. Heinecke, U. Herzschuh, A. Ibrahim, V. Kisand, K.H. Kjaer, Y. Lammers, J. Littlefair, E. Messager, M.-. Monchamp, F. Olajos, W. Orsi, M.W. Pedersen, D.P. Rijal, J. Rydberg, T. Spanbauer, K.R. Stoof-Leichsenring, P. Taberlet, L. Talas, C. Thomas, D.A. Walsh, Y. Wang, E. Willerslev, A. van Woerkom, H.H. Zimmermann, M.J.L. Coolen, L.S. Epp, I. Domaizon, I.G. Alsos, L. Parducci. - In: QUATERNARY. - ISSN 2571-550X. - 4:1(2021), pp. 6.1-6.58. [10.3390/quat4010006]

Titolo:	Lake sedimentary dna research on past terrestrial and aquatic biodiversity : Overview and recommendations
Autori:	Capo E. (Corresponding) Giguet-Covex C. (Corresponding) Rouillard A. (Corresponding) Nota K. (Corresponding) Heintzman P. D. (Corresponding) Vuillemin A. (Corresponding) Ariztegui D. Arnaud F. Belle S. Bertilsson S. Bigler C. Bindler R. Brown A. G. Clarke C. L. Crump S. E. Debroas D. Englund G. FICETOLA, GENTILE FRANCESCO Garner R. E. Gauthier J. Gregory-Eaves I. Heinecke L. Herzschuh U. Ibrahim A. Kisand V. Kjaer K. H. Lammers Y. Littlefair J. Messager E. Monchamp M. -E. Olajos F. Orsi W. Pedersen M. W. Rijal D. P. Rydberg J. Spanbauer T. Stoof-Leichsenring K. R. Taberlet P. Talas L. Thomas C. Walsh D. A. Wang Y. Willerslev E. van Woerkom A. Zimmermann H. H. Coolen M. J. L. (Corresponding) Epp L. S. (Corresponding) Domaizon I. (Corresponding) Alsos I. G. Parducci L. (Corresponding) mostra contributor esterni nascondi contributor esterni
Parole Chiave:	Biodiversity; Lake sediments; Metabarcoding; Metagenomics; Paleoecology; Paleogenetics; Paleogenomics; Paleolimnology; Sedimentary ancient DNA; Sedimentary DNA
Settore Scientifico Disciplinare:	Settore BIO/05 - Zoologia Settore BIO/03 - Botanica Ambientale e Applicata Settore BIO/07 - Ecologia Settore BIO/18 - Genetica Settore GEO/01 - Paleontologia e Paleoecologia
Data di pubblicazione:	2021
Rivista:	QUATERNARY
Tipologia:	Article (author)
Digital Object Identifier (DOI):	http://dx.doi.org/10.3390/quat4010006
Appare nelle tipologie:	01 - Articolo su periodico

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