In this work, we report a computational study of the vibrational features of four different nucleobases employing the divide-and-conquer semiclassical initial value representation molecular dynamics method. Calculations are performed on uracil, cytosine, thymine, and adenine. Results show that the overall accuracy with respect to experiments is within 20 wavenumbers, regardless of the dimensionality of the nucleobase. Vibrational estimates are accurate even in the complex case of cytosine, where two relevant conformers are taken into account. These results are promising in the perspective of future studies on more complex systems, such as nucleotides or nucleobase pairs.

Vibrational investigation of nucleobases by means of divide and conquer semiclassical dynamics / F. Gabas, G. Di Liberto, M. Ceotto. - In: THE JOURNAL OF CHEMICAL PHYSICS. - ISSN 0021-9606. - 150:22(2019 Jun 14).

Vibrational investigation of nucleobases by means of divide and conquer semiclassical dynamics

F. Gabas
Primo
;
G. Di Liberto
Secondo
;
M. Ceotto
Ultimo
2019

Abstract

In this work, we report a computational study of the vibrational features of four different nucleobases employing the divide-and-conquer semiclassical initial value representation molecular dynamics method. Calculations are performed on uracil, cytosine, thymine, and adenine. Results show that the overall accuracy with respect to experiments is within 20 wavenumbers, regardless of the dimensionality of the nucleobase. Vibrational estimates are accurate even in the complex case of cytosine, where two relevant conformers are taken into account. These results are promising in the perspective of future studies on more complex systems, such as nucleotides or nucleobase pairs.
No
English
Settore CHIM/02 - Chimica Fisica
Articolo
Esperti anonimi
Ricerca di base
Pubblicazione scientifica
   Divide and Conquer ad initio semiclassical molecular dynamics for spectropic calculations of complex systems (SEMICOMPLEX)
   SEMICOMPLEX
   EUROPEAN COMMISSION
   H2020
   647107
14-giu-2019
12-giu-2019
American Institute of Physics
150
22
224107
12
Pubblicato
Periodico con rilevanza internazionale
scopus
pubmed
crossref
Aderisco
info:eu-repo/semantics/article
Vibrational investigation of nucleobases by means of divide and conquer semiclassical dynamics / F. Gabas, G. Di Liberto, M. Ceotto. - In: THE JOURNAL OF CHEMICAL PHYSICS. - ISSN 0021-9606. - 150:22(2019 Jun 14).
open
Prodotti della ricerca::01 - Articolo su periodico
3
262
Article (author)
si
F. Gabas, G. Di Liberto, M. Ceotto
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/651945
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