Nuclear magnetic resonance (NMR) spectroscopy provides detailed information about the structure and dynamics of proteins by exploiting the conformational dependence of the magnetic properties of certain atomic nuclei. The mapping between NMR measurements and molecular structures, however, often requires approximated descriptions based on the fitting of a number of parameters, thus reducing the quality of the information available from the experiments. To improve on this limitation, we show here that it is possible to use pseudocontact shifts and residual dipolar couplings as "exact" NMR restraints. We implement this strategy by using a replica-averaging method and illustrate its application by calculating an ensemble of structures representing the dynamics of the two-domain protein calmodulin.

Using Pseudocontact Shifts and Residual Dipolar Couplings as Exact NMR Restraints for the Determination of Protein Structural Ensembles / C. Camilloni, M. Vendruscolo. - In: BIOCHEMISTRY. - ISSN 0006-2960. - 54:51(2015), pp. 7470-7476. [10.1021/acs.biochem.5b01138]

Using Pseudocontact Shifts and Residual Dipolar Couplings as Exact NMR Restraints for the Determination of Protein Structural Ensembles

C. Camilloni
Primo
;
2015

Abstract

Nuclear magnetic resonance (NMR) spectroscopy provides detailed information about the structure and dynamics of proteins by exploiting the conformational dependence of the magnetic properties of certain atomic nuclei. The mapping between NMR measurements and molecular structures, however, often requires approximated descriptions based on the fitting of a number of parameters, thus reducing the quality of the information available from the experiments. To improve on this limitation, we show here that it is possible to use pseudocontact shifts and residual dipolar couplings as "exact" NMR restraints. We implement this strategy by using a replica-averaging method and illustrate its application by calculating an ensemble of structures representing the dynamics of the two-domain protein calmodulin.
English
Molecular Dynamics Simulation; Nuclear Magnetic Resonance, Biomolecular; Protein Conformation; Proteins; Biochemistry; Medicine (all)
Settore FIS/07 - Fisica Applicata(Beni Culturali, Ambientali, Biol.e Medicin)
Articolo
Esperti anonimi
Pubblicazione scientifica
2015
American Chemical Society
54
51
7470
7476
7
Pubblicato
Periodico con rilevanza internazionale
NON aderisco
info:eu-repo/semantics/article
Using Pseudocontact Shifts and Residual Dipolar Couplings as Exact NMR Restraints for the Determination of Protein Structural Ensembles / C. Camilloni, M. Vendruscolo. - In: BIOCHEMISTRY. - ISSN 0006-2960. - 54:51(2015), pp. 7470-7476. [10.1021/acs.biochem.5b01138]
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Prodotti della ricerca::01 - Articolo su periodico
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262
Article (author)
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C. Camilloni, M. Vendruscolo
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/494778
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