Using a set of six 1H-detected triple-resonance NMR experiments, we establish a method for sequence-specific backbone resonance assignment of magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectra of 5-30 kDa proteins. The approach relies on perdeuteration, amide 2H/ 1H exchange, high magnetic fields, and high-spinning frequencies (ωr/2π ≥ 60 kHz) and yields high-quality NMR data, enabling the use of automated analysis. The method is validated with five examples of proteins in different condensed states, including two microcrystalline proteins, a sedimented virus capsid, and two membrane-embedded systems. In comparison to contemporary 13C/15N-based methods, this approach facilitates and accelerates the MAS NMR assignment process, shortening the spectral acquisition times and enabling the use of unsupervised state-of-the-art computational data analysis protocols originally developed for solution NMR.

Rapid proton-detected NMR assignment for proteins with fast magic angle spinning / E. Barbet-Massin, A.J. Pell, J.S. Retel, L.B. Andreas, K. Jaudzems, W..T. Franks, A.J. Nieuwkoop, M. Hiller, V. Higman, P. Guerry, A. Bertarello, M.J. Knight, M. Felletti, T. Le Marchand, S. Kotelovica, I. Akopjana, K. Tars, M. Stoppini, V. Bellotti, M. Bolognesi, S. Ricagno, J.J. Chou, R.G. Griffin, H. Oschkinat, A. Lesage, L. Emsley, T. Herrmann, G. Pintacuda. - In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. - ISSN 0002-7863. - 136:35(2014 Sep 03), pp. 12489-12497. [10.1021/ja507382j]

Rapid proton-detected NMR assignment for proteins with fast magic angle spinning

M. Bolognesi;S. Ricagno;
2014

Abstract

Using a set of six 1H-detected triple-resonance NMR experiments, we establish a method for sequence-specific backbone resonance assignment of magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectra of 5-30 kDa proteins. The approach relies on perdeuteration, amide 2H/ 1H exchange, high magnetic fields, and high-spinning frequencies (ωr/2π ≥ 60 kHz) and yields high-quality NMR data, enabling the use of automated analysis. The method is validated with five examples of proteins in different condensed states, including two microcrystalline proteins, a sedimented virus capsid, and two membrane-embedded systems. In comparison to contemporary 13C/15N-based methods, this approach facilitates and accelerates the MAS NMR assignment process, shortening the spectral acquisition times and enabling the use of unsupervised state-of-the-art computational data analysis protocols originally developed for solution NMR.
English
Chemistry (all); Catalysis; Biochemistry; Colloid and Surface Chemistry
Settore BIO/10 - Biochimica
Articolo
Esperti anonimi
Ricerca di base
Pubblicazione scientifica
3-set-2014
American Chemical Society
136
35
12489
12497
9
Pubblicato
Periodico con rilevanza internazionale
scopus
Aderisco
info:eu-repo/semantics/article
Rapid proton-detected NMR assignment for proteins with fast magic angle spinning / E. Barbet-Massin, A.J. Pell, J.S. Retel, L.B. Andreas, K. Jaudzems, W..T. Franks, A.J. Nieuwkoop, M. Hiller, V. Higman, P. Guerry, A. Bertarello, M.J. Knight, M. Felletti, T. Le Marchand, S. Kotelovica, I. Akopjana, K. Tars, M. Stoppini, V. Bellotti, M. Bolognesi, S. Ricagno, J.J. Chou, R.G. Griffin, H. Oschkinat, A. Lesage, L. Emsley, T. Herrmann, G. Pintacuda. - In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. - ISSN 0002-7863. - 136:35(2014 Sep 03), pp. 12489-12497. [10.1021/ja507382j]
reserved
Prodotti della ricerca::01 - Articolo su periodico
28
262
Article (author)
no
E. Barbet Massin, A.J. Pell, J.S. Retel, L.B. Andreas, K. Jaudzems, W..T. Franks, A.J. Nieuwkoop, M. Hiller, V. Higman, P. Guerry, A. Bertarello, M.J. Knight, M. Felletti, T. Le Marchand, S. Kotelovica, I. Akopjana, K. Tars, M. Stoppini, V. Bellotti, M. Bolognesi, S. Ricagno, J.J. Chou, R.G. Griffin, H. Oschkinat, A. Lesage, L. Emsley, T. Herrmann, G. Pintacuda
File in questo prodotto:
File Dimensione Formato  
PDF_proof_hi.pdf

accesso riservato

Descrizione: Articolo principale
Tipologia: Pre-print (manoscritto inviato all'editore)
Dimensione 4.67 MB
Formato Adobe PDF
4.67 MB Adobe PDF   Visualizza/Apri   Richiedi una copia
Barbet-Massin_2014_JACS.pdf

accesso riservato

Tipologia: Publisher's version/PDF
Dimensione 3.53 MB
Formato Adobe PDF
3.53 MB Adobe PDF   Visualizza/Apri   Richiedi una copia
Pubblicazioni consigliate

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/243848
Citazioni
  • ???jsp.display-item.citation.pmc??? 82
  • Scopus 235
  • ???jsp.display-item.citation.isi??? 225
social impact