The Yakushevich model of DNA torsion dynamics supports soliton solutions, which are supposed to be of special interest for DNA transcription. In the discussion of the model, one usually adopts the approximation center dot(0)-> 0, where center dot(0) is a parameter related to the equilibrium distance between bases in a Watson-Crick pair. Here we analyze the Yakushevich model without center dot(0)-> 0. The model still supports soliton solutions indexed by two winding numbers (n,m); we discuss in detail the fundamental solitons, corresponding to winding numbers (1,0) and (0,1) respectively.

Solitons in the Yakushevich model of DNA beyond the contact approximation / G. Gaeta. - In: PHYSICAL REVIEW E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS. - ISSN 1539-3755. - 74:2(2006), pp. 021921.021921-1-021921.021921-9.

Solitons in the Yakushevich model of DNA beyond the contact approximation

G. Gaeta
Primo
2006

Abstract

The Yakushevich model of DNA torsion dynamics supports soliton solutions, which are supposed to be of special interest for DNA transcription. In the discussion of the model, one usually adopts the approximation center dot(0)-> 0, where center dot(0) is a parameter related to the equilibrium distance between bases in a Watson-Crick pair. Here we analyze the Yakushevich model without center dot(0)-> 0. The model still supports soliton solutions indexed by two winding numbers (n,m); we discuss in detail the fundamental solitons, corresponding to winding numbers (1,0) and (0,1) respectively.
DNA ; Nonlinear Dynamics ; Solitons
Settore MAT/07 - Fisica Matematica
2006
http://link.aps.org/abstract/PRE/v74/e021921
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/22502
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