Background HIV-1 non-B subtypes have recently entered Western Europe following immigration from other regions. The distribution of non-B clades and their association with demographic factors, over the entire course of the HIV-1 epidemic, have not been fully investigated in Italy. Methods We carried out a phylogenetic analysis of HIV-1 pol sequences derived from 3670 patients followed at 50 Italian clinical centres over nearly three decades. Results Overall, 417 patients (11.4%) carried non-B subtypes. The prevalence of non-B strains increased from 2.6% in 1980–1992 to 18.9% in 1993–2008 (Po0.0001) in a subset of 2479 subjects with a known year of diagnosis. A multivariate analysis on a subset of 1364 patients for whom relevant demographic data were available indicated that African ethnicity, heterosexual route of infection and year of diagnosis were independently associated with non-B HIV-1 infection (P 0.0001). All pure subtypes, except for clade K, and seven circulating recombinant forms were detected, accounting for 56.6 and 34.1% of the non-B infections, respectively. The F1 subtype was the most prevalent non-B clade among Europeans and was acquired heterosexually in half of this patient population. Unique recombinant forms accounted for 9.4% of the non-B sequences and showed a B/F1 recombination pattern in one-third of cases. Conclusions The circulation of non-B clades has significantly increased in Italy in association with demographic changes. Spread of the F1 subtype and B/F recombinants appears to predominate, which may result in a redistribution of the relative proportions of the different strains, and this could lead to overlapping epidemics. Thus, the HIV-1 landscape in Italy may in future be distinct from that of the rest of Europe.

ANDAMENTO DELLA PREVALENZA IN ITALIA DEI CEPPI NON-B DI HIV-1 NEGLI ULTIMI TRENT'ANNI / I.c. Caramma ; relatore: Massimo Galli. Universita' degli Studi di Milano, 2010 Dec 21. 23. ciclo, Anno Accademico 2010. [10.13130/caramma-ilaria-chiara_phd2010-12-21].

ANDAMENTO DELLA PREVALENZA IN ITALIA DEI CEPPI NON-B DI HIV-1 NEGLI ULTIMI TRENT'ANNI

I.C. Caramma
2010

Abstract

Background HIV-1 non-B subtypes have recently entered Western Europe following immigration from other regions. The distribution of non-B clades and their association with demographic factors, over the entire course of the HIV-1 epidemic, have not been fully investigated in Italy. Methods We carried out a phylogenetic analysis of HIV-1 pol sequences derived from 3670 patients followed at 50 Italian clinical centres over nearly three decades. Results Overall, 417 patients (11.4%) carried non-B subtypes. The prevalence of non-B strains increased from 2.6% in 1980–1992 to 18.9% in 1993–2008 (Po0.0001) in a subset of 2479 subjects with a known year of diagnosis. A multivariate analysis on a subset of 1364 patients for whom relevant demographic data were available indicated that African ethnicity, heterosexual route of infection and year of diagnosis were independently associated with non-B HIV-1 infection (P 0.0001). All pure subtypes, except for clade K, and seven circulating recombinant forms were detected, accounting for 56.6 and 34.1% of the non-B infections, respectively. The F1 subtype was the most prevalent non-B clade among Europeans and was acquired heterosexually in half of this patient population. Unique recombinant forms accounted for 9.4% of the non-B sequences and showed a B/F1 recombination pattern in one-third of cases. Conclusions The circulation of non-B clades has significantly increased in Italy in association with demographic changes. Spread of the F1 subtype and B/F recombinants appears to predominate, which may result in a redistribution of the relative proportions of the different strains, and this could lead to overlapping epidemics. Thus, the HIV-1 landscape in Italy may in future be distinct from that of the rest of Europe.
21-dic-2010
Settore MED/17 - Malattie Infettive
HIV-1 ; NUOVA DIAGNOSI DI INFEZIONE DA HIV ; RICOMBINANTI ; SOTTOTIPI ; VARIANTI
GALLI, MASSIMO
Doctoral Thesis
ANDAMENTO DELLA PREVALENZA IN ITALIA DEI CEPPI NON-B DI HIV-1 NEGLI ULTIMI TRENT'ANNI / I.c. Caramma ; relatore: Massimo Galli. Universita' degli Studi di Milano, 2010 Dec 21. 23. ciclo, Anno Accademico 2010. [10.13130/caramma-ilaria-chiara_phd2010-12-21].
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/150137
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