Physical mapping of genes by fluorescence in situ hybridization (FISH) seems to be out of fashion in species whose assembled genome sequences are available. However, in this work we evidence the existence of errors in gene location in the Btau_4.0 assembly. We show that DFNA5 and CHCHD6 genes are located on BTA4 and BTA22, respectively, instead of BTA10 and BTA3, as displayed by Btau_4.0. This report emphasizes the need to verify the data on physical localization of genes in the cattle genome (at least by taking into account comparative data reported in available papers) and the need to improve the cattle genome assembly. Our results indicate that FISH mapping in cattle is still useful.

F.I.S.H. mapping in Cattle (Bos taurus) is not yet out of fashion / L. De Lorenzi, L. Molteni, P. Parma. - In: JOURNAL OF APPLIED GENETICS. - ISSN 1234-1983. - 51:4(2010), pp. 497-499. [10.1007/BF03208879]

F.I.S.H. mapping in Cattle (Bos taurus) is not yet out of fashion

L. De Lorenzi
Primo
;
L. Molteni
Secondo
;
P. Parma
Ultimo
2010

Abstract

Physical mapping of genes by fluorescence in situ hybridization (FISH) seems to be out of fashion in species whose assembled genome sequences are available. However, in this work we evidence the existence of errors in gene location in the Btau_4.0 assembly. We show that DFNA5 and CHCHD6 genes are located on BTA4 and BTA22, respectively, instead of BTA10 and BTA3, as displayed by Btau_4.0. This report emphasizes the need to verify the data on physical localization of genes in the cattle genome (at least by taking into account comparative data reported in available papers) and the need to improve the cattle genome assembly. Our results indicate that FISH mapping in cattle is still useful.
cattle; cytogenetic; fluorescence in situ hybridization; genome;
Settore AGR/17 - Zootecnica Generale e Miglioramento Genetico
2010
Article (author)
File in questo prodotto:
File Dimensione Formato  
Lorenzi2010_Article_FISHMappingInCattleBosTaurusLI.pdf

accesso riservato

Tipologia: Publisher's version/PDF
Dimensione 136.04 kB
Formato Adobe PDF
136.04 kB Adobe PDF   Visualizza/Apri   Richiedi una copia
Pubblicazioni consigliate

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/148382
Citazioni
  • ???jsp.display-item.citation.pmc??? 1
  • Scopus 10
  • ???jsp.display-item.citation.isi??? 10
social impact