The availability of synthetic, analytical, and predictive tools makes DNA an ideal platform, not yet considered, to investigate statistical and soft matter physics. Here we report and interpret the equilibrium collective ordering in solutions of random-sequence DNA (rsDNA) oligomers of lengths L = 8 and L = 12. Despite the extreme molecular diversity inherent in rsDNA solutions, which for L = 12 are composed of 20 million distinct molecular species, these systems develop long-range columnar liquid crystal (LC) ordering when equilibrated at high osmotic pressure. By a combination of experimental models and computed statistics, we demonstrate that the residual end-to-end attraction between rsDNA duplexes, which typically terminate with various forms of pairing errors, is indeed sufficient to drive LC ordering. The resulting narrow range of isotropic-LC phase coexistence, in seeming contrast with the variety of phase behaviors of the species composing rsDNA, demonstrates that the (nearly) continuum distribution of molecular interaction strengths effectively reduces the tendency for demixing instead of enhancing it, in line with theoretical modeling.

Random-Sequence DNA Oligomers Make Liquid Crystals: A Case of Collective Ordering in a Superdiverse Environment / S. Marni, T.P. Fraccia, T. Bellini. - In: ACS NANO. - ISSN 1936-0851. - 18:50(2024 Dec), pp. 34034-34043. [10.1021/acsnano.4c09400]

Random-Sequence DNA Oligomers Make Liquid Crystals: A Case of Collective Ordering in a Superdiverse Environment

S. Marni
Primo
;
T.P. Fraccia
Secondo
;
T. Bellini
Ultimo
2024

Abstract

The availability of synthetic, analytical, and predictive tools makes DNA an ideal platform, not yet considered, to investigate statistical and soft matter physics. Here we report and interpret the equilibrium collective ordering in solutions of random-sequence DNA (rsDNA) oligomers of lengths L = 8 and L = 12. Despite the extreme molecular diversity inherent in rsDNA solutions, which for L = 12 are composed of 20 million distinct molecular species, these systems develop long-range columnar liquid crystal (LC) ordering when equilibrated at high osmotic pressure. By a combination of experimental models and computed statistics, we demonstrate that the residual end-to-end attraction between rsDNA duplexes, which typically terminate with various forms of pairing errors, is indeed sufficient to drive LC ordering. The resulting narrow range of isotropic-LC phase coexistence, in seeming contrast with the variety of phase behaviors of the species composing rsDNA, demonstrates that the (nearly) continuum distribution of molecular interaction strengths effectively reduces the tendency for demixing instead of enhancing it, in line with theoretical modeling.
DNA hybridization with defects; liquid crystals; multicomponent fluids; pairing statistics; random sequences
Settore PHYS-06/A - Fisica per le scienze della vita, l'ambiente e i beni culturali
   National Center for Gene Therapy and Drugs based on RNA Technology
   MINISTERO DELL'UNIVERSITA' E DELLA RICERCA
   CN00000041
dic-2024
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/1141362
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