Reaction systems are discrete dynamical systems that simulate biological processes within living cells through finite sets of reactants, inhibitors, and products. In this paper, we study the computational complexity of deciding on the existence of fixed points and attractors in the restricted class of additive reaction systems, in which each reaction involves at most one reactant and no inhibitors. We prove that all the considered problems, that are known to be hard for other classes of reaction systems, are polynomially solvable in additive systems. To arrive at these results, we provide several non-trivial reductions to problems on a polynomially computable graph representation of reaction systems that might prove useful for addressing other related problems in the future.

Fixed points and attractors of additive reaction systems / R. Ascone, G. Bernardini, L. Manzoni. - In: NATURAL COMPUTING. - ISSN 1567-7818. - 23:2(2024 Jun), pp. 205-215. [10.1007/s11047-024-09977-2]

Fixed points and attractors of additive reaction systems

G. Bernardini
Secondo
;
2024

Abstract

Reaction systems are discrete dynamical systems that simulate biological processes within living cells through finite sets of reactants, inhibitors, and products. In this paper, we study the computational complexity of deciding on the existence of fixed points and attractors in the restricted class of additive reaction systems, in which each reaction involves at most one reactant and no inhibitors. We prove that all the considered problems, that are known to be hard for other classes of reaction systems, are polynomially solvable in additive systems. To arrive at these results, we provide several non-trivial reductions to problems on a polynomially computable graph representation of reaction systems that might prove useful for addressing other related problems in the future.
reaction system; computational complexity; finite dynamical system; complexity of the dynamic; resource-bounded reaction system
Settore INFO-01/A - Informatica
giu-2024
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/1131080
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