Single clustering methods have often been used to elucidate clusters in high dimensional medical data, even though reliance on a single algorithm is known to be problematic. In this paper, we present a methodology to determine a set of 'core classes' by using a range of techniques to reach consensus across several different clustering algorithms, and to ascertain the key characteristics of these classes. We apply the methodology to immunohistochemical data from breast cancer patients. In doing so, we identify six core classes, of which several may be novel sub-groups not previously emphasised in literature.

A methodology to identify consensus classes from clustering algorithms applied to immunohistochemical data from breast cancer patients / D. Soria, J.M. Garibaldi, F. Ambrogi, A.R. Green, D. Powe, E. Rakha, R.D. Macmillan, R.W. Blamey, G. Ball, P.J. Lisboa, T.A. Etchells, P. Boracchi, E. Biganzoli, I.O. Ellis. - In: COMPUTERS IN BIOLOGY AND MEDICINE. - ISSN 0010-4825. - 40:3(2010), pp. 318-330. [10.1016/j.compbiomed.2010.01.003]

A methodology to identify consensus classes from clustering algorithms applied to immunohistochemical data from breast cancer patients

F. Ambrogi;P. Boracchi;E. Biganzoli
Penultimo
;
2010

Abstract

Single clustering methods have often been used to elucidate clusters in high dimensional medical data, even though reliance on a single algorithm is known to be problematic. In this paper, we present a methodology to determine a set of 'core classes' by using a range of techniques to reach consensus across several different clustering algorithms, and to ascertain the key characteristics of these classes. We apply the methodology to immunohistochemical data from breast cancer patients. In doing so, we identify six core classes, of which several may be novel sub-groups not previously emphasised in literature.
Breast cancer; Clustering methods; Consensus clustering; Molecular classification; Validity indices
Settore MED/01 - Statistica Medica
Settore INF/01 - Informatica
2010
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/147349
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