Cloud technologies offer, among other advantages, the possibility to provide to users ad hoc configured virtual servers. For example, Galaxy instances to those users that need full administrative control over a private-instance due to different scenarios, e.g concerns about data privacy, particular job types, intensive computational loads, and tools development. Recently we developed Laniakea, a Galaxy “on-demand” software platform based on cloud technology that allows its users to easily deploy and become the owners and administrators of production-grade Galaxy instances. In February 2020 “Laniakea@ReCaS”, the first Laniakea-based service, was officially launched by ELIXIR-IT. We provide an overview of the first year of activity of “Laniakea@ReCaS”, focusing on several use-cases that leveraged the service to achieve results that would have been more difficult, or impossible, for the users to achieve relying on standard public Galaxy instances. During its first year, “Laniakea@ReCaS” has supported the daily work of several groups from different institutions across a range of applications and activities. Aside from handling the use-cases data analysis needs in terms of resources and tools, “Laniakea@ReCaS” has proved to be an interesting platform to quickly develop and make available novel Galaxy based services. As proof of this, during the first year of the service activity three Galaxy servers specific for different pipelines have been developed and made public: VINYL a novel software suite for variant prioritization, CorGAT a pipeline for the functional annotation of SARS-CoV-2 genomes and Pipe-T, a workflow for the analysis of RT-qPCR data.

Laniakea@ReCaS: first year of activity of a Laniakea-based Galaxy “on-demand” service / P. Mandreoli, M. Tangaro, M. Chiara, G. Donvito, M. Antonacci, G. Pesole, F. Zambelli. ((Intervento presentato al convegno Galaxy Community Conference tenutosi a Online nel 2021.

Laniakea@ReCaS: first year of activity of a Laniakea-based Galaxy “on-demand” service

P. Mandreoli;M. Chiara;F. Zambelli
2021

Abstract

Cloud technologies offer, among other advantages, the possibility to provide to users ad hoc configured virtual servers. For example, Galaxy instances to those users that need full administrative control over a private-instance due to different scenarios, e.g concerns about data privacy, particular job types, intensive computational loads, and tools development. Recently we developed Laniakea, a Galaxy “on-demand” software platform based on cloud technology that allows its users to easily deploy and become the owners and administrators of production-grade Galaxy instances. In February 2020 “Laniakea@ReCaS”, the first Laniakea-based service, was officially launched by ELIXIR-IT. We provide an overview of the first year of activity of “Laniakea@ReCaS”, focusing on several use-cases that leveraged the service to achieve results that would have been more difficult, or impossible, for the users to achieve relying on standard public Galaxy instances. During its first year, “Laniakea@ReCaS” has supported the daily work of several groups from different institutions across a range of applications and activities. Aside from handling the use-cases data analysis needs in terms of resources and tools, “Laniakea@ReCaS” has proved to be an interesting platform to quickly develop and make available novel Galaxy based services. As proof of this, during the first year of the service activity three Galaxy servers specific for different pipelines have been developed and made public: VINYL a novel software suite for variant prioritization, CorGAT a pipeline for the functional annotation of SARS-CoV-2 genomes and Pipe-T, a workflow for the analysis of RT-qPCR data.
No
English
27-lug-2021
Settore BIO/11 - Biologia Molecolare
Poster
Intervento inviato
Esperti anonimi
Pubblicazione scientifica
Galaxy Community Conference
Online
2021
Convegno internazionale
https://f1000research.com/posters/10-664
manual
P. Mandreoli, M. Tangaro, M. Chiara, G. Donvito, M. Antonacci, G. Pesole, F. Zambelli
Laniakea@ReCaS: first year of activity of a Laniakea-based Galaxy “on-demand” service / P. Mandreoli, M. Tangaro, M. Chiara, G. Donvito, M. Antonacci, G. Pesole, F. Zambelli. ((Intervento presentato al convegno Galaxy Community Conference tenutosi a Online nel 2021.
Prodotti della ricerca::14 - Intervento a convegno non pubblicato
info:eu-repo/semantics/conferenceObject
open
Conference Object
7
File in questo prodotto:
File Dimensione Formato  
f1000research-365608.pdf

accesso aperto

Descrizione: Poster
Tipologia: Altro
Dimensione 1.09 MB
Formato Adobe PDF
1.09 MB Adobe PDF Visualizza/Apri
Pubblicazioni consigliate

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/983058
Citazioni
  • ???jsp.display-item.citation.pmc??? ND
  • Scopus ND
  • ???jsp.display-item.citation.isi??? ND
social impact