The structures of 5547 organic crystals with two molecules in the asymmetric unit (Z' = 2) are collected from the Cambridge Structural Database, and compared with a sample of 45182 crystal structures with one molecule in the asymmetric unit (Z' = 1). A new method for standardizing H-atom positions is described. Approximate symmetry in Z' = 2 crystals is analyzed using real-space information only. Lattice energies are calculated by the PIXEL method and partitioned into contributions from the two different sites in Z02 crystals and into molecule-molecule contributions, with special attention paid to the most energetic molecular pair. There are no obvious differences between the Z0 1 and Z0 2 sets in chemical composition, except for a slightly smaller average size of Z0 2 molecules. The frequency of space groups P1, P21 and P1 increases in Z0 2 crystals, while the frequency of space groups P21/ c and P212121 decreases. 83% of the Z0 2 crystals show some form of pseudosymmetry with a tolerance of 0.5 A atom 1. The most energetic pair is on average more tightly bound in Z0 2 crystals than in Z0 1 crystals, and in Z0 2 crystals the asymmetric pair ranks first in the list of molecule - molecule energies in 55 - 60% of the cases. However, even in crystals where the asymmetric pair is the most energetic, its contribution to the total lattice energy can be as high as 70% or as low as 10%: in many cases, the asymmetry is between weakly interacting molecules. Structural molecular features leading to Z0 2 crystals are tentatively analyzed. On the whole, there appears to be a continuum of situations from asymmetric pairs formed between clearly different molecules that pack in clearly different environments ( hinting at causality of Z0 2) and pairs formed by nearly identical molecules packing in nearly identical environments ( hinting at casual, local conditions), but even in the latter case, there is no proof that a fully symmetric structure would be more stable.
Structure and energy in organic crystals with two molecules in the asymmetric unit: causality or chance? / A. Gavezzotti. - In: CRYSTENGCOMM. - ISSN 1466-8033. - 10:4(2008), pp. 389-398.
Structure and energy in organic crystals with two molecules in the asymmetric unit: causality or chance?
A. GavezzottiPrimo
2008
Abstract
The structures of 5547 organic crystals with two molecules in the asymmetric unit (Z' = 2) are collected from the Cambridge Structural Database, and compared with a sample of 45182 crystal structures with one molecule in the asymmetric unit (Z' = 1). A new method for standardizing H-atom positions is described. Approximate symmetry in Z' = 2 crystals is analyzed using real-space information only. Lattice energies are calculated by the PIXEL method and partitioned into contributions from the two different sites in Z02 crystals and into molecule-molecule contributions, with special attention paid to the most energetic molecular pair. There are no obvious differences between the Z0 1 and Z0 2 sets in chemical composition, except for a slightly smaller average size of Z0 2 molecules. The frequency of space groups P1, P21 and P1 increases in Z0 2 crystals, while the frequency of space groups P21/ c and P212121 decreases. 83% of the Z0 2 crystals show some form of pseudosymmetry with a tolerance of 0.5 A atom 1. The most energetic pair is on average more tightly bound in Z0 2 crystals than in Z0 1 crystals, and in Z0 2 crystals the asymmetric pair ranks first in the list of molecule - molecule energies in 55 - 60% of the cases. However, even in crystals where the asymmetric pair is the most energetic, its contribution to the total lattice energy can be as high as 70% or as low as 10%: in many cases, the asymmetry is between weakly interacting molecules. Structural molecular features leading to Z0 2 crystals are tentatively analyzed. On the whole, there appears to be a continuum of situations from asymmetric pairs formed between clearly different molecules that pack in clearly different environments ( hinting at causality of Z0 2) and pairs formed by nearly identical molecules packing in nearly identical environments ( hinting at casual, local conditions), but even in the latter case, there is no proof that a fully symmetric structure would be more stable.Pubblicazioni consigliate
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