Sfoglia per Autore
Laniakea : an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures
2020 M.A. Tangaro, G. Donvito, M. Antonacci, M. Chiara, P. Mandreoli, G. Pesole, F. Zambelli
Porting the rCASC workflow for scRNA-Seq data analysis to Galaxy and the Laniakea Galaxy on-demand system
2020 P. Mandreoli, L. Alessandrì, M.A. Tangaro, R. Calogero, F. Zambelli
On-demand Galaxy with Laniakea : results and future perspectives
2020 M.A. Tangaro, G. Donvito, M. Antonacci, M. Chiara, P. Mandreoli, M. Alverà, G. Pesole, F. Zambelli
VINYL : Variant prIoritizatioN bY survivaL analysis
2020 P. Mandreoli, M.A. Tangaro, D.S. Horner, F. Zambelli, G. Pesole, M. Chiara
ELIXIR-IT HPC@CINECA : high performance computing resources for the bioinformatics community
2020 T. Castrignanò, S. Gioiosa, T. Flati, M. Cestari, E. Picardi, M. Chiara, M. Fratelli, S. Amente, M. Cirilli, M.A. Tangaro, G. Chillemi, G. Pesole, F. Zambelli
The go-between : a Sox2-regulated gene expression program in relay neurons of the visual thalamus as a possible contributor to inherited vision disease
2020 L. Serra, M. Pernebrink, F. Zambelli, M. Studer, C. Cantù, G. Pavesi, S. Nicolis, S. Mercurio
Introduction to ELIXIR infrastructure in Italy
2020 F. Zambelli
Next generation sequencing of SARS-CoV-2 genomes : challenges, applications and opportunities
2020 M. Chiara, A.M. D'Erchia, C. Gissi, C. Manzari, A. Parisi, N. Resta, F. Zambelli, E. Picardi, G. Pavesi, D.S. Horner, G. Pesole
CorGAT : a tool for the functional annotation of SARS-CoV-2 genomes
2020 M. Chiara, F. Zambelli, M.A. Tangaro, P. Mandreoli, D.S. Horner, G. Pesole
VINYL : Variant prIoritizatioN by survivaL analysis
2020 M. Chiara, P. Mandreoli, M.A. Tangaro, A.M. D'Erchia, S. Sorrentino, C. Forleo, D.S. Horner, F. Zambelli, G. Pesole
Using RNentropy to Detect Significant Variation in Gene Expression Across Multiple RNA-Seq or Single-Cell RNA-Seq Samples
2021 F. Zambelli, G. Pavesi
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service
2021 M. Antonio Tangaro, P. Mandreoli, M. Chiara, G. Donvito, M. Antonacci, A. Parisi, A. Bianco, A. Romano, D. Manila Bianchi, D. Cangelosi, P. Uva, I. Molineris, V. Nosi, R.A. Calogero, L. Alessandri, E. Pedrini, M. Mordenti, E. Bonetti, L. Sangiorgi, G. Pesole, F. Zambelli
Ascan: a novel method for the study of allele specific expression in single individuals
2021 F. Zambelli, M. Chiara, E. Ferrandi, P. Mandreoli, M. Antonio Tangaro, G. Pavesi, G. Pesole
DOME: recommendations for supervised machine learning validation in biology
2021 I. Walsh, D. Fishman, D. Garcia-Gasulla, T. Titma, G. Pollastri, E. Capriotti, R. Casadio, S. Capella-Gutierrez, D. Cirillo, A. Del Conte, A.C. Dimopoulos, V.D. Del Angel, J. Dopazo, P. Fariselli, J.M. Fernandez, F. Huber, A. Kreshuk, T. Lenaerts, P.L. Martelli, A. Navarro, P.O. Broin, J. Pinero, D. Piovesan, M. Reczko, F. Ronzano, V. Satagopam, C. Savojardo, V. Spiwok, M.A. Tangaro, G. Tartari, D. Salgado, A. Valencia, F. Zambelli, J. Harrow, F.E. Psomopoulos, S.C.E. Tosatto
YAP contributes to DNA methylation remodeling upon mouse embryonic stem cell differentiation
2021 F. Passaro, I. De Martino, F. Zambelli, G. Di Benedetto, M. Barbato, A.M. D'Erchia, C. Manzari, G. Pesole, M. Mutarelli, D. Cacchiarelli, D. Antonini, S. Parisi, T. Russo
CorGAT and CorGAT-tracker : Functional annotation of SARS-CoV-2 genomes and tracking mutations and variants of concern
2021 E. Ferrandi, M. Chiara, F. Zambelli, M. Tangaro, P. Mandreoli, D. Horner, G. Pesole
Laniakea – Update 2021
2021 M. Tangaro, G. Donvito, M. Antonacci, M. Chiara, P. Mandreoli, G. Pesole, F. Zambelli
Laniakea@ReCaS: first year of activity of a Laniakea-based Galaxy “on-demand” service
2021 P. Mandreoli, M. Tangaro, M. Chiara, G. Donvito, M. Antonacci, G. Pesole, F. Zambelli
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic {mRNAs} untranslated regions
2022 C. Lo Giudice, F. Zambelli, M. Chiara, G. Pavesi, M. Antonio Tangaro, E. Picardi, G. Pesole
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
2022 E. Afgan, A. Nekrutenko, B.A. Grüning, D. Blankenberg, J. Goecks, M.C. Schatz, A.E. Ostrovsky, A. Mahmoud, A.J. Lonie, A. Syme, A. Fouilloux, A. Bretaudeau, A. Nekrutenko, A. Kumar, A.C. Eschenlauer, A.D. Desanto, A. Guerler, B. Serrano-Solano, B. Batut, B.A. Grüning, B.W. Langhorst, B. Carr, B.A. Raubenolt, C.J. Hyde, C.J. Bromhead, C.B. Barnett, C. Royaux, C. Gallardo, D. Blankenberg, D.J. Fornika, D. Baker, D. Bouvier, D. Clements, D.A. de Lima Morais, D.L. Tabernero, D. Lariviere, E. Nasr, E. Afgan, F. Zambelli, F. Heyl, F. Psomopoulos, F. Coppens, G.R. Price, G. Cuccuru, G.L. Corguillé, G. Von Kuster, G.G. Akbulut, H. Rasche, H. Hans-Rudolf, I. Eguinoa, I. Makunin, I.J. Ranawaka, J.P. Taylor, J. Joshi, J. Hillman-Jackson, J. Goecks, J.M. Chilton, K. Kamali, K. Suderman, K. Poterlowicz, L.B. Yvan, L. Lopez-Delisle, L. Sargent, M.E. Bassetti, M.A. Tangaro, M. van den Beek, M. Čech, M. Bernt, M. Fahrner, M. Tekman, M.C. Föll, M.C. Schatz, M.R. Crusoe, M. Roncoroni, N. Kucher, N. Coraor, N. Stoler, N. Rhodes, N. Soranzo, N. Pinter, N.A. Goonasekera, P.A. Moreno, P. Videm, P. Melanie, P. Mandreoli, P.D. Jagtap, Q. Gu, R.J.M. Weber, R. Lazarus, R.H.P. Vorderman, S. Hiltemann, S. Golitsynskiy, S. Garg, S.A. Bray, S.L. Gladman, S. Leo, S.P. Mehta, T.J. Griffin, V. Jalili, V. Yves, V. Wen, V.K. Nagampalli, W.A. Bacon, W. de Koning, W. Maier, P.J. Briggs
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