Sfoglia per Autore
An algorithm for finding signals of unknown length in DNA sequences
2001 G. Pavesi, G. Mauri, G. Pesole
RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
2004 G. Pavesi, G. Mauri, M. Stefani, G. Pesole
In silico representation and discovery of transcription factor binding sites
2004 G. Pavesi, G. Mauri, G. Pesole
GeneSyn: a tool for detecting conserved gene order across genomes
2004 G. Pavesi, G. Mauri, F. Iannelli, C. Gissi, G. Pesole
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes
2004 G. Pavesi, P. Mereghetti, G. Mauri, G. Pesole
The transcriptional landscape of the mammalian genome
2005 P. Carninci, T. Kasukawa, S. Katayama, J. Gough, M.C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, R. Kodzius, K. Shimokawa, V.B. Bajic, S.E. Brenner, S. Batalov, A.R. Forrest, M. Zavolan, M.J. Davis, L.G. Wilming, V. Aidinis, J.E. Allen, A. Ambesi Impiombato, R. Apweiler, R.N. Aturaliya, T.L. Bailey, M. Bansal, L. Baxter, K.W. Beisel, T. Bersano, H. Bono, A.M. Chalk, K.P. Chiu, V. Choudhary, A. Christoffels, D.R. Clutterbuck, M.L. Crowe, E. Dalla, B.P. Dalrymple, B. de Bono, G. Della Gatta, D. di Bernardo, T. Down, P. Engstrom, M. Fagiolini, G. Faulkner, C.F. Fletcher, T. Fukushima, M. Furuno, S. Futaki, M. Gariboldi, P. Georgii Hemming, T.R. Gingeras, T. Gojobori, R.E. Green, S. Gustincich, M. Harbers, Y. Hayashi, T.K. Hensch, N. Hirokawa, D. Hill, L. Huminiecki, M. Iacono, K. Ikeo, A. Iwama, T. Ishikawa, M. Jakt, A. Kanapin, M. Katoh, Y. Kawasawa, J. Kelso, H. Kitamura, H. Kitano, G. Kollias, S.P. Krishnan, A. Kruger, S.K. Kummerfeld, I.V. Kurochkin, L.F. Lareau, D. Lazarevic, L. Lipovich, J. Liu, S. Liuni, S. Mcwilliam, M. Madan Babu, M. Madera, L. Marchionni, H. Matsuda, S. Matsuzawa, H. Miki, F. Mignone, S. Miyake, K. Morris, S. Mottagui Tabar, N. Mulder, N. Nakano, H. Nakauchi, P. Ng, R. Nilsson, S. Nishiguchi, S. Nishikawa, F. Nori, O. Ohara, Y. Okazaki, V. Orlando, K.C. Pang, W.J. Pavan, G. Pavesi, G. Pesole, N. Petrovsky, S. Piazza, J. Reed, J.F. Reid, B.Z. Ring, M. Ringwald, B. Rost, Y. Ruan, S.L. Salzberg, A. Sandelin, C. Schneider, C. Schonbach, K. Sekiguchi, C.A. Semple, S. Seno, L. Sessa, Y. Sheng, Y. Shibata, H. Shimada, K. Shimada, D. Silva, B. Sinclair, S. Sperling, E. Stupka, K. Sugiura, R. Sultana, Y. Takenaka, K. Taki, K. Tammoja, S.L. Tan, S. Tang, M.S. Taylor, J. Tegner, S.A. Teichmann, H.R. Ueda, E. van Nimwegen, R. Verardo, C.L. Wei, K. Yagi, H. Yamanishi, E. Zabarovsky, S. Zhu, A. Zimmer, W. Hide, C. Bult, S.M. Grimmond, R.D. Teasdale, E.T. Liu, V. Brusic, J. Quackenbush, C. Wahlestedt, J.S. Mattick, D.A. Hume, C. Kai, D. Sasaki, Y. Tomaru, S. Fukuda, M. Kanamori Katayama, M. Suzuki, J. Aoki, T. Arakawa, J. Iida, K. Imamura, M. Itoh, T. Kato, H. Kawaji, N. Kawagashira, T. Kawashima, M. Kojima, S. Kondo, H. Konno, K. Nakano, N. Ninomiya, T. Nishio, M. Okada, C. Plessy, K. Shibata, T. Shiraki, S. Suzuki, M. Tagami, K. Waki, A. Watahiki, Y. Okamura Oho, H. Suzuki, J. Kawai, Y. Hayashizaki
Assessing computational tools for the discovery of transcription factor binding sites
2005 M. Tompa, N. Li, T.L. Bailey, G.M. Church, B. De Moor, E. Eskin, A.V. Favorov, M.C. Frith, Y. Fu, W.J. Kent, V.J. Makeev, A.A. Mironov, W.S. Noble, G. Pavesi, G. Pesole, M. Regnier, N. Simonis, S. Sinha, G. Thijs, J. van Helden, M. Vandenbogaert, Z. Weng, C. Workman, C. Ye, Z. Zhu
On-line construction of compact directed acyclic word graphs
2005 S. Inenaga, H. Hoshino, A. Shinohara, M. Takeda, S. Arikawa, G. Mauri, G. Pavesi
Algorithms for pattern matching and discovery in RNA secondary structure
2005 G. Mauri, G. Pavesi
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes
2006 G. Pavesi, P. Mereghetti, F. Zambelli, M. Stefani, G. Mauri, G. Pesole
Using Weeder to Find Conserved Transcription Factor Binding Sites
2006 G. Pavesi, G. Pesole
Computational Tools for the Discovery of Regulatory Elements in Nucleotide Sequences from Co-Regulated or Homologous Genes
2006 G. Pavesi, F. Zambelli, G. Mauri, G. Pesole
Defining the landscape of NF-Y binding to CCAAT boxes in vivo
2006 M. Ceribelli, D. Dolfini, G. Pavesi, M.A. Viganò, R. Mantovani
Two Myb genes synergically control aliphatic glucosinolate metabolism in Arabidopsis
2007 V. Grandi, W. van Leeuwen, G. Pavesi, M. Bertossi, M. Aarts, R. de Vos, A. Bovy, C. Rivetti, D. Panigada, D. Rigamonti, E. Tomasso, P. Morandini
Classification of co-expressed genes from DNA regulatory regions
2007 G. Pavesi, G. Valentini
Signal processing in comparative genomics
2007 M. Re', G. Pavesi
Finding transcription factors with over-represented binding sites in sequences from co-regulated or co-expressed genes
2007 F. Zambelli, W. Breviario, G. Pesole, G. Pavesi
Prediction of over represented transcription factor binding sites in co-regulated genes using whole genome matching statistics
2007 G. Pavesi, F. Zambelli
Finding conserved gene order across multiple genomes
2007 G. Pavesi, G. Pesole
Genomic organization and evolutionary conservation of plant D-type cyclins
2007 M. Menges, G. Pavesi, P.A. Morandini, L. Bögre, J.S. Murray
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