We analyze traveling solitary wave solutions in the Barbi-Cocco-Peyrard twist-opening model of nonlinear DNA dynamics. We identify conditions, involving an interplay of physical parameters and asymptotic behavior, for such solutions to exist, and provide first-order ordinary differential equations whose solutions give the required solitary waves; these are not solvable in analytical terms, but are easily integrated numerically. The conditions for existence of solitary waves are not satisfied for trivial asymptotic behavior and physical values of the parameters, i.e., the Barbi-Cocco-Peyrard model admits only solitary wave solutions that entail a global modification of the molecule; this is compared with the situation met in another recently formulated class of DNA models with two degrees of freedom per site.

Solitary waves in twist-opening models of DNA dynamics / G. Gaeta, L. Venier. - In: PHYSICAL REVIEW E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS. - ISSN 1539-3755. - 78:1(2008 Jul 07), pp. 011901.011901-1-011901.011901-9. [10.1103/PhysRevE.78.011901]

Solitary waves in twist-opening models of DNA dynamics

G. Gaeta
Primo
;
2008

Abstract

We analyze traveling solitary wave solutions in the Barbi-Cocco-Peyrard twist-opening model of nonlinear DNA dynamics. We identify conditions, involving an interplay of physical parameters and asymptotic behavior, for such solutions to exist, and provide first-order ordinary differential equations whose solutions give the required solitary waves; these are not solvable in analytical terms, but are easily integrated numerically. The conditions for existence of solitary waves are not satisfied for trivial asymptotic behavior and physical values of the parameters, i.e., the Barbi-Cocco-Peyrard model admits only solitary wave solutions that entail a global modification of the molecule; this is compared with the situation met in another recently formulated class of DNA models with two degrees of freedom per site.
Settore MAT/07 - Fisica Matematica
7-lug-2008
Article (author)
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2434/46753
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